PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY38994.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

LBD

Protein Properties

Length: 289aa MW: 32801.6 Da PI: 5.1133

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY38994.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	124.6	4.8e-39	10	111	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 aCa+Ck++rr+C+++C lapyfp +qpk f+n+hklFG+sn++k++k+l ++e++ +am+s++y+A++r r Pv+G+ g+i +l+ q+ q+++el++++ GAY38994.1 10 ACAVCKYQRRRCSAECLLAPYFPPDQPKMFQNAHKLFGVSNIVKIIKNLdSDEQKAEAMRSIIYQANIRDRFPVHGCWGIICQLRYQIWQAEEELHAVH 108 7**********************************************566679*****************************************9 PP DUF260 99 eel 101 ++l GAY38994.1 109 AQL 111 985 PP

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence
MTLKGGTSQA CAVCKYQRRR CSAECLLAPY FPPDQPKMFQ NAHKLFGVSN IVKIIKNLDS 60 DEQKAEAMRS IIYQANIRDR FPVHGCWGII CQLRYQIWQA EEELHAVHAQ LEMYRQHYQQ 120 QVSTMTDDVP SQLELGIGMA PPNALSLFNH NPQQQQQPYN AAALPLSQQH SYSNNSYNSP 180 YMDVKDSSVS NSLWIQHPYA INNNANSLAI QSQLIASQPL TIQQEVVQDY DEMHPFFDTI 240 DDRQSYIDSK EAYESSSEES LKDTTQSIEH VAENELKSAA ACFSLTSVN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	5e-54	LBD family protein