PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY38976.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB

Protein Properties

Length: 389aa MW: 43514.7 Da PI: 5.757

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY38976.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.4	9.4e-15	14	65	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqkyl 48 +g W++eEd +++ +v ++G +W++++++ ++R++k+c++rw +yl GAY38976.1 14 KGIWSAEEDAKILAYVSKHGACNWTAVPKKAArppgLRRCGKSCRLRWTNYL 65 678***********************************************97 PP
2	Myb_DNA-binding	44.5	3.5e-14	73	114	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++T++E+e ++++++ G++ W+ Ia+ ++ gRt++++k++w++ GAY38976.1 73 SFTPQEEEMIIRLHAAIGSR-WSIIAQQLP-GRTDNDVKNYWNT 114 79****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence
MGRPPCCDKL NVKKGIWSAE EDAKILAYVS KHGACNWTAV PKKAARPPGL RRCGKSCRLR 60 WTNYLRPDLK HESFTPQEEE MIIRLHAAIG SRWSIIAQQL PGRTDNDVKN YWNTKLRKKL 120 TEMGIDPVTH KPFSQILADY GNIGGLPKSG TRIGCLNRDM SKNAFMMQKP EQHESPFQVF 180 SNISSHLMTM VSPNVEPIKD TLLNHYNDHS NSMDLLAQLQ AVRLVAEASN NNCATNANES 240 ISPPQIFFNE AGSLSSSSSS SSTCSTAGQE KSPLNFTWED FLLDDDDAFL SADIPQAQEQ 300 EHDTHSMVEF SSKDFTNHTR NVMPQNQNNN ETAITQVNNG VDQRMDSGGP SYEVAAASSS 360 FVEAMLDREN DMLLEFPNLL VLDEPHFYN

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence

MGRPPCCDKL NVKKGIWSAE EDAKILAYVS KHGACNWTAV PKKAARPPGL RRCGKSCRLR  60
WTNYLRPDLK HESFTPQEEE MIIRLHAAIG SRWSIIAQQL PGRTDNDVKN YWNTKLRKKL  120
TEMGIDPVTH KPFSQILADY GNIGGLPKSG TRIGCLNRDM SKNAFMMQKP EQHESPFQVF  180
SNISSHLMTM VSPNVEPIKD TLLNHYNDHS NSMDLLAQLQ AVRLVAEASN NNCATNANES  240
ISPPQIFFNE AGSLSSSSSS SSTCSTAGQE KSPLNFTWED FLLDDDDAFL SADIPQAQEQ  300
EHDTHSMVEF SSKDFTNHTR NVMPQNQNNN ETAITQVNNG VDQRMDSGGP SYEVAAASSS  360
FVEAMLDREN DMLLEFPNLL VLDEPHFYN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28470.1	5e-73	MYB family protein