PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY38549.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C2H2

Protein Properties

Length: 590aa MW: 64596.8 Da PI: 9.419

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY38549.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.9	1.7e-05	98	120	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H GAY38549.1 98 FVCEICNKGFQRDQNLQLHRRGH 120 89*******************88 PP
2	zf-C2H2	12.5	0.00045	174	196	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ GAY38549.1 174 WKCDKCSKRYAVQSDWKAHSKTC 196 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 590 aa Download sequence
MMKGLIFHQQ QQQQQQHHHH QVLEENMSNL TSQSGTEASV SSGNIRGAET TNHQQYFATP 60 PTQAQPPAKK KRNLPGNPDP DAEVIALSPK TLMATNRFVC EICNKGFQRD QNLQLHRRGH 120 NLPWKLKQRT SKEIRKKVYV CPEPNCVHHD PSRALGDLTG IKKHFCRKHG EKKWKCDKCS 180 KRYAVQSDWK AHSKTCGTRE YRCDCGTLFS RRDSFITHRA FCDALAEEST RAITGTNPIL 240 SSSSHHQPGI VAGASSHVNL QIPQFNPQDF SVFSLKKEQQ SYSLRQEMPP WLGSQQPSIL 300 GSAVPGLGQP PSSSHTVDHL SSPSSSIFNT RLHQDHQFTQ TTHQDLTRND HPANPNPSLG 360 PTLSVPHTNY HQAMASAFPH MSATALLQKA AQMGATMSSS KASTATGNSS SSSSPAHHAA 420 LTRPHQQPPP PQQAHVSATP EHPAGNNKTK TTTGFGLNLS SREGVVHGLT PFGTKTSGGG 480 SSGAFIQEMI MNTSFSSGYA AASPFDDALT FGGVFNSKKE PHLNHSFNES SSLSRTSGIN 540 DHGEEMTRDF LGLRALSQTD ILNIAGLGNC IDTRSSHEQQ LNHSQKPWQG

Sequence ? help Back to Top

Protein Sequence Length: 590 aa Download sequence

MMKGLIFHQQ QQQQQQHHHH QVLEENMSNL TSQSGTEASV SSGNIRGAET TNHQQYFATP  60
PTQAQPPAKK KRNLPGNPDP DAEVIALSPK TLMATNRFVC EICNKGFQRD QNLQLHRRGH  120
NLPWKLKQRT SKEIRKKVYV CPEPNCVHHD PSRALGDLTG IKKHFCRKHG EKKWKCDKCS  180
KRYAVQSDWK AHSKTCGTRE YRCDCGTLFS RRDSFITHRA FCDALAEEST RAITGTNPIL  240
SSSSHHQPGI VAGASSHVNL QIPQFNPQDF SVFSLKKEQQ SYSLRQEMPP WLGSQQPSIL  300
GSAVPGLGQP PSSSHTVDHL SSPSSSIFNT RLHQDHQFTQ TTHQDLTRND HPANPNPSLG  360
PTLSVPHTNY HQAMASAFPH MSATALLQKA AQMGATMSSS KASTATGNSS SSSSPAHHAA  420
LTRPHQQPPP PQQAHVSATP EHPAGNNKTK TTTGFGLNLS SREGVVHGLT PFGTKTSGGG  480
SSGAFIQEMI MNTSFSSGYA AASPFDDALT FGGVFNSKKE PHLNHSFNES SSLSRTSGIN  540
DHGEEMTRDF LGLRALSQTD ILNIAGLGNC IDTRSSHEQQ LNHSQKPWQG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	125	137	KLKQRTSKEIRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-118	C2H2 family protein