PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY38325.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C2H2

Protein Properties

Length: 492aa MW: 54410 Da PI: 9.8578

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY38325.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.1	0.00014	66	86	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+k F r nL+ H r H GAY38325.1 66 CEICNKGFQRDQNLQLHRRGH 86 *******************88 PP
2	zf-C2H2	11.9	0.00069	140	162	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H + + GAY38325.1 140 WKCEKCSKKYAVQSDWKAHSKIC 162 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 492 aa Download sequence
MMSQDHGLSV PSTLKGFVQE PNSNPNPNPS SNQLKRKRNL PGTPDPDAEV IALSPKSLMA 60 TNRFLCEICN KGFQRDQNLQ LHRRGHNLPW KLKQRTNKEV RKKVYICPEK SCVHHDPSRA 120 LGDLTGIKKH FSRKHGEKKW KCEKCSKKYA VQSDWKAHSK ICGTREYRCD CGTLFSRKDS 180 FITHRAFCDA LAEESARFTT ISSTNPQAAA AIPQFSSVFR QQQQSAPGSE LAGNNVIADG 240 QKPRLPLWLD QANNSNAMLT PIGSSSTGLP ELSQMVAPMN MFGSLSQMQW FSGGANLSMS 300 SSSSLPRGIP KEEEENKAYN LSESMTSLYP SNQSGQQQQQ QQQQQQQGLA HMSATALLQK 360 AAQMGSTRSN ANNSTGFGLM STSFNSFNQT DKNELHKFFK QPNQQVADND QNLNELIMNS 420 FSCPTNMGAV AGSSNASLLM ANAKNASNEA ERRLTRDFLG VGVESSRPLS QQELAKFMNL 480 SSQYGGNPHH RS

Sequence ? help Back to Top

Protein Sequence Length: 492 aa Download sequence

MMSQDHGLSV PSTLKGFVQE PNSNPNPNPS SNQLKRKRNL PGTPDPDAEV IALSPKSLMA  60
TNRFLCEICN KGFQRDQNLQ LHRRGHNLPW KLKQRTNKEV RKKVYICPEK SCVHHDPSRA  120
LGDLTGIKKH FSRKHGEKKW KCEKCSKKYA VQSDWKAHSK ICGTREYRCD CGTLFSRKDS  180
FITHRAFCDA LAEESARFTT ISSTNPQAAA AIPQFSSVFR QQQQSAPGSE LAGNNVIADG  240
QKPRLPLWLD QANNSNAMLT PIGSSSTGLP ELSQMVAPMN MFGSLSQMQW FSGGANLSMS  300
SSSSLPRGIP KEEEENKAYN LSESMTSLYP SNQSGQQQQQ QQQQQQQGLA HMSATALLQK  360
AAQMGSTRSN ANNSTGFGLM STSFNSFNQT DKNELHKFFK QPNQQVADND QNLNELIMNS  420
FSCPTNMGAV AGSSNASLLM ANAKNASNEA ERRLTRDFLG VGVESSRPLS QQELAKFMNL  480
SSQYGGNPHH RS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	91	103	KLKQRTNKEVRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45260.1	1e-109	C2H2 family protein