PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY38251.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

AP2

Protein Properties

Length: 510aa MW: 55336.8 Da PI: 6.6098

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY38251.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.4	6.5e-17	171	220	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g GAY38251.1 171 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 220 78*****************......55**********************997 PP
2	AP2	41.1	4.5e-13	263	313	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k +g GAY38251.1 263 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 313 89******.7**5553..2.26******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 510 aa Download sequence
MLDLNLNVMS IESTQQNSDE ERVGSVVLVE KSPEGSSGTS NSSVVNADAS SNVGDDESCS 60 TRAVAGDNSV FTFNFDILKV GGDSGNVRNE NVEQNNAVSR KEFAFFPASG GGENGGGQSS 120 RSWIDLSFDK QQQQYQNQQP QQQEGGGEVR ATQQSSPVVK KSRRGPRSRS SQYRGVTFYR 180 RTGRWESHIW DCGKQVYLGG FDTAHAAARA YDRAAIKFRG VDADINFNLA DYEDDMKQMK 240 NLTKEEFVHI LRRQSTGFSR GSSKYRGVTL HKCGRWEARM GQFLGKKYIY LGLFDSEVEA 300 ARAYDKAAIK CNGREAVTNF EPSTYEGEMI TEGSNEGGDH NLDLNLGISS SFGSGPKANE 360 GHSQFLSGPY GAHGGRTSRT ENSTTAAVGD SASKGLMRTS EHPIFWNGAY PGLLTTEEKA 420 TEKRIELGPP QGLPNWAWQM HGQVSGTPAS LLSSAASSGF PFSAAPPSAA VLSSKPLNPS 480 DVNLCFTSTN TTAPNTSQFY YQMKLPQAPP

Sequence ? help Back to Top

Protein Sequence Length: 510 aa Download sequence

MLDLNLNVMS IESTQQNSDE ERVGSVVLVE KSPEGSSGTS NSSVVNADAS SNVGDDESCS  60
TRAVAGDNSV FTFNFDILKV GGDSGNVRNE NVEQNNAVSR KEFAFFPASG GGENGGGQSS  120
RSWIDLSFDK QQQQYQNQQP QQQEGGGEVR ATQQSSPVVK KSRRGPRSRS SQYRGVTFYR  180
RTGRWESHIW DCGKQVYLGG FDTAHAAARA YDRAAIKFRG VDADINFNLA DYEDDMKQMK  240
NLTKEEFVHI LRRQSTGFSR GSSKYRGVTL HKCGRWEARM GQFLGKKYIY LGLFDSEVEA  300
ARAYDKAAIK CNGREAVTNF EPSTYEGEMI TEGSNEGGDH NLDLNLGISS SFGSGPKANE  360
GHSQFLSGPY GAHGGRTSRT ENSTTAAVGD SASKGLMRTS EHPIFWNGAY PGLLTTEEKA  420
TEKRIELGPP QGLPNWAWQM HGQVSGTPAS LLSSAASSGF PFSAAPPSAA VLSSKPLNPS  480
DVNLCFTSTN TTAPNTSQFY YQMKLPQAPP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.3	1e-124	AP2 family protein