PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY38250.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

AP2

Protein Properties

Length: 525aa MW: 57084.8 Da PI: 6.7951

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY38250.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.3	6.8e-17	171	220	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g GAY38250.1 171 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 220 78*****************......55**********************997 PP
2	AP2	27.4	8.4e-09	263	302	1	44
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAak 44 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+ GAY38250.1 263 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAAR 302 89******.7**5553..2.26*******88997 PP

Sequence ? help Back to Top
Protein Sequence Length: 525 aa Download sequence
MLDLNLNVMS IESTQQNSDE ERVGSVVLVE KSPEGSSGTS NSSVVNADAS SNVGDDESCS 60 TRAVAGDNSV FTFNFDILKV GGDSGNVRNE NVEQNNAVSR KEFAFFPASG GGENGGGQSS 120 RSWIDLSFDK QQQQYQNQQP QQQEGGGEVR ATQQSSPVVK KSRRGPRSRS SQYRGVTFYR 180 RTGRWESHIW DCGKQVYLGG FDTAHAAARA YDRAAIKFRG VDADINFNLA DYEDDMKQMK 240 NLTKEEFVHI LRRQSTGFSR GSSKYRGVTL HKCGRWEARM GQFLGKKYIY LGLFDSEVEA 300 ARVPTNTYLP FGFLQIRAYD KAAIKCNGRE AVTNFEPSTY EGEMITEGSN EGGDHNLDLN 360 LGISSSFGSG PKANEGHSQF LSGPYGAHGG RTSRTENSTT AAVGDSASKG LMRTSEHPIF 420 WNGAYPGLLT TEEKATEKRI ELGPPQGLPN WAWQMHGQVS GTPASLLSSA ASSGFPFSAA 480 PPSAAVLSSK PLNPSDVNLC FTSTNTTAPN TSQFYYQMKL PQAPP

Sequence ? help Back to Top

Protein Sequence Length: 525 aa Download sequence

MLDLNLNVMS IESTQQNSDE ERVGSVVLVE KSPEGSSGTS NSSVVNADAS SNVGDDESCS  60
TRAVAGDNSV FTFNFDILKV GGDSGNVRNE NVEQNNAVSR KEFAFFPASG GGENGGGQSS  120
RSWIDLSFDK QQQQYQNQQP QQQEGGGEVR ATQQSSPVVK KSRRGPRSRS SQYRGVTFYR  180
RTGRWESHIW DCGKQVYLGG FDTAHAAARA YDRAAIKFRG VDADINFNLA DYEDDMKQMK  240
NLTKEEFVHI LRRQSTGFSR GSSKYRGVTL HKCGRWEARM GQFLGKKYIY LGLFDSEVEA  300
ARVPTNTYLP FGFLQIRAYD KAAIKCNGRE AVTNFEPSTY EGEMITEGSN EGGDHNLDLN  360
LGISSSFGSG PKANEGHSQF LSGPYGAHGG RTSRTENSTT AAVGDSASKG LMRTSEHPIF  420
WNGAYPGLLT TEEKATEKRI ELGPPQGLPN WAWQMHGQVS GTPASLLSSA ASSGFPFSAA  480
PPSAAVLSSK PLNPSDVNLC FTSTNTTAPN TSQFYYQMKL PQAPP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.3	1e-120	AP2 family protein