PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY37701.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C2H2

Protein Properties

Length: 409aa MW: 43608.4 Da PI: 4.4568

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY37701.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.2	0.0011	248	270	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C +C+ksF + L H +H GAY37701.1 248 YSCLICNKSFDKHQALGGHVASH 270 99*********999999998877 PP

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence
MAEEDQEDQE QPLPAAVAVE AAQEKPNQLV SEADDDTEIT KGSSLSLKLK IPITNPPAAA 60 AAEADDHQFM EEDLLLQQEQ EQDQQDRSGV LGLPRTCSEC GKQFTSGKAL GGHKRACLQK 120 IKNGTTHNNQ NPRLIKKAVA VKPEEAGEED EDEDEEEAMQ QAVSDLLLLA QLSADDCNDN 180 KEQRGTFDHH RVVSSVDSGY GVLKIKDNNK IDDDNDEDDE REKKKEGTTA GGGALKEEPV 240 VMSTAQTYSC LICNKSFDKH QALGGHVASH NKNKNVKESS SASAAAEDSK GEDKLAAAAS 300 DEETGESSRE LAAAAGGGGG SSEHKCNICN KIFPTGQALG GHKRCHWTGP AEALSSSSQV 360 TTSAGEVTQR APSPSRRVHD FDLNDTPPEY YQFHGCEAAG PSAAAATIS

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence

MAEEDQEDQE QPLPAAVAVE AAQEKPNQLV SEADDDTEIT KGSSLSLKLK IPITNPPAAA  60
AAEADDHQFM EEDLLLQQEQ EQDQQDRSGV LGLPRTCSEC GKQFTSGKAL GGHKRACLQK  120
IKNGTTHNNQ NPRLIKKAVA VKPEEAGEED EDEDEEEAMQ QAVSDLLLLA QLSADDCNDN  180
KEQRGTFDHH RVVSSVDSGY GVLKIKDNNK IDDDNDEDDE REKKKEGTTA GGGALKEEPV  240
VMSTAQTYSC LICNKSFDKH QALGGHVASH NKNKNVKESS SASAAAEDSK GEDKLAAAAS  300
DEETGESSRE LAAAAGGGGG SSEHKCNICN KIFPTGQALG GHKRCHWTGP AEALSSSSQV  360
TTSAGEVTQR APSPSRRVHD FDLNDTPPEY YQFHGCEAAG PSAAAATIS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56200.1	3e-20	C2H2 family protein