PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY37682.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GRAS
Protein Properties Length: 457aa    MW: 51789.1 Da    PI: 7.1878
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY37682.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS400.51.7e-122654561373
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn..........sseelaalkl....f 84 
                 +++lL++cAe +s+ d+++a++l++ ls ++sp+gd+++Rl++ f +AL+ rl+  + + +   ++ ++t++ +               +al+     +
  GAY37682.1  65 MRQLLISCAELFSQADFSAAHRLISILSANSSPYGDSIERLVHQFIRALSLRLNLhHANATLLMMNITTTTTATtlpyntttynD---RNALQScylsL 160
                 589**************************************************98444455555555555554456665554321...2222223567* PP

        GRAS  85 sevsPilkfshltaNqaIleave.geervHiiDfdisqGlQWpaLlqaLasRp......egppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176
                 ++++P+++fshltaNqaIle+++ g++ +Hi+Dfdi++G+QWp+L+qaL +R       ++pp+lRiTg g+    + e l++tgerL kfA++lg++f
  GAY37682.1 161 NQITPFIRFSHLTANQAILESLQvGQQSIHILDFDIMHGVQWPPLMQALVERFknsnmlQPPPMLRITGTGH----DIEILQRTGERLLKFAQSLGLRF 255
                 *********************98466**************************976777777***********....9********************** PP

        GRAS 177 efnvl..vak...rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                 +f++l  + +   +++   +++L + pgE+la+n++l lh+ll +++++++  + +L+ +k l+P+vv+++e+ea+hn++ Fl+rf+ea+++y a+fds
  GAY37682.1 256 QFHPLllMNDdptSVAFCLPSALTILPGETLAINCMLFLHKLL-KDHDTRD-LRLFLHKIKALNPRVVTIAEREASHNHPVFLQRFVEAVDHYGAIFDS 352
                 ****97633312134444799**********************.5555555.69********************************************* PP

        GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLv 368
                 lea+lp++s+er  vE++++greiv++va+eg++r+erhe++ +W++ l+++G+++vpls +a +qaklllr ++ s+gy+++  ++sl+lgW++r+L+
  GAY37682.1 353 LEATLPPNSRERLAVEQVWFGREIVEIVATEGENRKERHERFDSWEMILRSCGYSNVPLSGYALSQAKLLLRLHYpSEGYQLQILNNSLFLGWQNRALF 451
                 *************************************************************************************************** PP

        GRAS 369 svSaW 373
                 svS+W
  GAY37682.1 452 SVSSW 456
                 ***** PP
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    
MLGSLNNTTS SRHDQQQEED PLAAAASSSD LMLQHHQPLH QSHHQYSSSS SRVGGLMNSP  60
PAIHMRQLLI SCAELFSQAD FSAAHRLISI LSANSSPYGD SIERLVHQFI RALSLRLNLH  120
HANATLLMMN ITTTTTATTL PYNTTTYNDR NALQSCYLSL NQITPFIRFS HLTANQAILE  180
SLQVGQQSIH ILDFDIMHGV QWPPLMQALV ERFKNSNMLQ PPPMLRITGT GHDIEILQRT  240
GERLLKFAQS LGLRFQFHPL LLMNDDPTSV AFCLPSALTI LPGETLAINC MLFLHKLLKD  300
HDTRDLRLFL HKIKALNPRV VTIAEREASH NHPVFLQRFV EAVDHYGAIF DSLEATLPPN  360
SRERLAVEQV WFGREIVEIV ATEGENRKER HERFDSWEMI LRSCGYSNVP LSGYALSQAK  420
LLLRLHYPSE GYQLQILNNS LFLGWQNRAL FSVSSWH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-135GRAS family protein