PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY37512.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family M-type_MADS
Protein Properties Length: 160aa    MW: 18197.4 Da    PI: 10.756
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY37512.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.91.3e-181053245
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                r e+   rq+ +skR+ gilKKA EL vLCd++ a+++fs+tgk
  GAY37512.1 10 RLESMKARQTKYSKRKIGILKKARELAVLCDTDLALLMFSPTGK 53
                6688999***********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    
MGRRKLKIRR LESMKARQTK YSKRKIGILK KARELAVLCD TDLALLMFSP TGKPSLCVGQ  60
NKDLSTVLER LAKMSVDDRE ERRGYTMKLL KKIYANSEVD PRNFSLDREW KNPHNVKDIA  120
QINIMEEHLV GSLLKIRNKK LYVLNGIPEA TGTGAAATKA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69540.12e-27M-type_MADS family protein