PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY37168.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

AP2

Protein Properties

Length: 574aa MW: 62256.2 Da PI: 8.0181

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY37168.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	34.7	4.6e-11	198	257	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++ + ++ +e+Aa+a++ a++k++g GAY37168.1 198 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQGNYSGYDKEEKAARAYDLAALKYWG 257 57*****************66555447633588888889999************98 PP
2	AP2	47	6.2e-15	300	351	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g GAY37168.1 300 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 351 57**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 574 aa Download sequence
MNNNNNNMNV NLSSSSSSSN SINMDHSAWL GFSLSNNNLQ TSSTSDPESS HICLFEAFTT 60 AATATTASGS TINLARGGGG EATGIASATD LSIFTGSPKL EDFLGGSCTA TPPQPPQVQL 120 GHHHLSSATT AHEIYDSELK TIAASFLRGF ATEQTDIHHQ QQQQQQHLKH HHQQQQLVPL 180 VAQPAPKKTV DTFGQRTSIY RGVTRHRWTG RYEAHLWDNS CRREGQSRKG RQGNYSGYDK 240 EEKAARAYDL AALKYWGPTT TTNFPVSNYE KELEDMKNMT RQEFVASLRR KSSGFSRGAS 300 IYRGVTRHHQ HGRWQARIGR VAGNKDLYLG TFSTQEEAAE AYDIAAIKFR GLNAVTNFDM 360 SRYDVKSIAN SNLPIGGITG KSKNSSESVS DCKSLDGGSR SDDRDISSAS SHLAAFASSH 420 PATSTLSFAL PIKQDPSADY WSNLLGYQNN TTATPLTNAK CLSIAPTYLQ SPTSSPSFNV 480 DFAANPSSAV NESSNNGLFN VGNYLQQQQQ QGGVTNSTTT TTTSAHTGSS NIPFATPIGL 540 NSNSYESWIS PSLHSFQTAK PSLSVFQTPI FGME

Sequence ? help Back to Top

Protein Sequence Length: 574 aa Download sequence

MNNNNNNMNV NLSSSSSSSN SINMDHSAWL GFSLSNNNLQ TSSTSDPESS HICLFEAFTT  60
AATATTASGS TINLARGGGG EATGIASATD LSIFTGSPKL EDFLGGSCTA TPPQPPQVQL  120
GHHHLSSATT AHEIYDSELK TIAASFLRGF ATEQTDIHHQ QQQQQQHLKH HHQQQQLVPL  180
VAQPAPKKTV DTFGQRTSIY RGVTRHRWTG RYEAHLWDNS CRREGQSRKG RQGNYSGYDK  240
EEKAARAYDL AALKYWGPTT TTNFPVSNYE KELEDMKNMT RQEFVASLRR KSSGFSRGAS  300
IYRGVTRHHQ HGRWQARIGR VAGNKDLYLG TFSTQEEAAE AYDIAAIKFR GLNAVTNFDM  360
SRYDVKSIAN SNLPIGGITG KSKNSSESVS DCKSLDGGSR SDDRDISSAS SHLAAFASSH  420
PATSTLSFAL PIKQDPSADY WSNLLGYQNN TTATPLTNAK CLSIAPTYLQ SPTSSPSFNV  480
DFAANPSSAV NESSNNGLFN VGNYLQQQQQ QGGVTNSTTT TTTSAHTGSS NIPFATPIGL  540
NSNSYESWIS PSLHSFQTAK PSLSVFQTPI FGME

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57390.1	1e-142	AP2 family protein