PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY37071.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HD-ZIP
Protein Properties Length: 331aa    MW: 35900.3 Da    PI: 5.8097
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY37071.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.93.1e-17273326255
                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
    Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                 rk+ +++k+q   Lee F+++ +++ +++  LAk+l+L  rqV vWFqNrRa++
  GAY37071.1 273 RKKLRLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARH 326
                 778899**********************************************95 PP
2HD-ZIP_I/II79.45.9e-26273326154
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARt 54 
                  +kk+rlsk+q+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRAR+
   GAY37071.1 273 RKKLRLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARH 326
                  69***************************************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    
MELGLSLGDA AGSSKPFEWM EKSHTHAHTR TNRSNKGIGF CMELSIGPTS SVREDGDDDN  60
RKPTQEDEDH HHHEDKQTET AAAAARLVDS AEIRRCSTPT PTAETANIIQ QLDLLPNTPV  120
VVPLPRNPTP SSILASFPAA NWTSAGSSEA AGSGQMARDA NKLPMAIPAP LDLLVPHHND  180
DEDPSSPEAE DGDGSHGAGA LSSSSLNTTS SAQMDFCIHS SNHHHNDTST TGTGGTNNIR  240
KSCGDIFRAS NDNNNEVVDG CSELEDENGC STRKKLRLSK QQSAFLEESF KEHTTLTPKQ  300
KLALAKQLNL RPRQVEVWFQ NRRARHVPLS Y
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1272278TRKKLRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.12e-22HD-ZIP family protein