PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY36974.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C3H

Protein Properties

Length: 476aa MW: 53981.2 Da PI: 7.1835

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY36974.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.4	3.7e-06	3	26	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k++lC+ffa G C G+ C F+H+ GAY36974.1 3 KRVLCKFFAH-GACLKGEHCEFSHD 26 99**6666.***********5 PP
2	zf-CCCH	19.2	2.1e-06	34	54	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C ++++ G+C+y +rC++ H+ GAY36974.1 34 ICTYYQK-GFCSYASRCRYEHV 54 7****.*********997 PP
3	zf-CCCH	19.1	2.4e-06	131	153	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+ fa+ G C++G++C+ +Hg GAY36974.1 131 RSICS-FAAAGNCPRGEKCPHIHG 153 67899.**************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence
MSKRVLCKFF AHGACLKGEH CEFSHDWKDP PNNICTYYQK GFCSYASRCR YEHVKPSRSE 60 SAASSSSSVS HPSRATSSGI TKVPGVMPEL SALSRPFLPP NKTAWNPESV CNDSLENDEV 120 DEPRNLKPAD RSICSFAAAG NCPRGEKCPH IHGDTCPTCG KQCLHPFRPE EREEHMKSCE 180 KKQKHLEALR RSQEIECSVC LDRVLSKPTA AERKFGLLSE CDHPFCISCI RNWRSSSPTS 240 GMDVNTALRA CPICRKLSYF VIPSVIWYYT PEEKQEIIDS YKSKLKSIDC KHFNFGNGNC 300 PFGTSCFYKH MVKPGSYMWK YHRPPPRRPP PFRPPPSRSN VVDMDSFIDA FGDLLGEDEP 360 DFFDAENEVR MALDVEMALL LTQLDFDSSD SSDYEIIRTR YDISSPFCVG HLSCSSSWCF 420 DSPLHFASWN KMKLLHAYTD GRLEEVVLRH LGSDDGSTVI AKDIRLSEFL TNMHIR

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence

MSKRVLCKFF AHGACLKGEH CEFSHDWKDP PNNICTYYQK GFCSYASRCR YEHVKPSRSE  60
SAASSSSSVS HPSRATSSGI TKVPGVMPEL SALSRPFLPP NKTAWNPESV CNDSLENDEV  120
DEPRNLKPAD RSICSFAAAG NCPRGEKCPH IHGDTCPTCG KQCLHPFRPE EREEHMKSCE  180
KKQKHLEALR RSQEIECSVC LDRVLSKPTA AERKFGLLSE CDHPFCISCI RNWRSSSPTS  240
GMDVNTALRA CPICRKLSYF VIPSVIWYYT PEEKQEIIDS YKSKLKSIDC KHFNFGNGNC  300
PFGTSCFYKH MVKPGSYMWK YHRPPPRRPP PFRPPPSRSN VVDMDSFIDA FGDLLGEDEP  360
DFFDAENEVR MALDVEMALL LTQLDFDSSD SSDYEIIRTR YDISSPFCVG HLSCSSSWCF  420
DSPLHFASWN KMKLLHAYTD GRLEEVVLRH LGSDDGSTVI AKDIRLSEFL TNMHIR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	1e-142	C3H family protein