PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY36973.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C3H

Protein Properties

Length: 433aa MW: 48707.2 Da PI: 7.0745

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY36973.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.6	3.3e-06	3	26	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k++lC+ffa G C G+ C F+H+ GAY36973.1 3 KRVLCKFFAH-GACLKGEHCEFSHD 26 99**6666.***********5 PP
2	zf-CCCH	19.4	1.9e-06	34	54	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C ++++ G+C+y +rC++ H+ GAY36973.1 34 ICTYYQK-GFCSYASRCRYEHV 54 7****.*********997 PP
3	zf-CCCH	19.2	2.1e-06	131	153	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+ fa+ G C++G++C+ +Hg GAY36973.1 131 RSICS-FAAAGNCPRGEKCPHIHG 153 67899.**************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence
MSKRVLCKFF AHGACLKGEH CEFSHDWKDP PNNICTYYQK GFCSYASRCR YEHVKPSRSE 60 SAASSSSSVS HPSRATSSGI TKVPGVMPEL SALSRPFLPP NKTAWNPESV CNDSLENDEV 120 DEPRNLKPAD RSICSFAAAG NCPRGEKCPH IHGDTCPTCG KQCLHPFRPE EREEHMKSCE 180 KKQKHLEALR RSQEIECSVC LDRVLSKPTA AERKFGLLSE CDHPFCISCI RNWRMSFGIT 240 HQKKNRKLLI ATSRNSSQSI ASTLTLVMAT AHLELVVSTR PPPRRPPPFR PPPSRSNVVD 300 MDSFIDAFGD LLGEDEPDFF DAENEVRMAL DVEMALLLTQ LDFDSSDSSD YEIIRTRYDI 360 SSPFCVGHLS CSSSWCFDSP LHFASWNKMK LLHAYTDGRL EEVVLRHLGS DDGSTVIAKD 420 IRLSEFLTNM HIR

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence

MSKRVLCKFF AHGACLKGEH CEFSHDWKDP PNNICTYYQK GFCSYASRCR YEHVKPSRSE  60
SAASSSSSVS HPSRATSSGI TKVPGVMPEL SALSRPFLPP NKTAWNPESV CNDSLENDEV  120
DEPRNLKPAD RSICSFAAAG NCPRGEKCPH IHGDTCPTCG KQCLHPFRPE EREEHMKSCE  180
KKQKHLEALR RSQEIECSVC LDRVLSKPTA AERKFGLLSE CDHPFCISCI RNWRMSFGIT  240
HQKKNRKLLI ATSRNSSQSI ASTLTLVMAT AHLELVVSTR PPPRRPPPFR PPPSRSNVVD  300
MDSFIDAFGD LLGEDEPDFF DAENEVRMAL DVEMALLLTQ LDFDSSDSSD YEIIRTRYDI  360
SSPFCVGHLS CSSSWCFDSP LHFASWNKMK LLHAYTDGRL EEVVLRHLGS DDGSTVIAKD  420
IRLSEFLTNM HIR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	5e-89	C3H family protein