PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY36924.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

ARF

Protein Properties

Length: 826aa MW: 92932.5 Da PI: 5.1972

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY36924.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	48.6	1.5e-15	198	304	1	98
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE.......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliy.....rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f k+l sd +k++ +v+ k ae+ ++kk+ + ++ +d +g W++++ +ks+r++lt+GWk Fv++++L gD+v+F + + GAY36924.1 198 FYKKLRASDQSKKK-IVIRAKDAENVfpflahlDYKKQINYSVIAKDVHGVAWKFNFVEvfnilLGKSRRHYLTGGWKYFVRQKNLVPGDTVIFIR--D 293 77999899999887.******777***99999***************55678889****************************4..4 PP SEE..EEEEE- CS B3 88 sefelvvkvfr 98 ++ +l++++ r GAY36924.1 294 ENNKLRLGIKR 304 66767877765 PP
2	Auxin_resp	102.9	3.9e-34	330	411	1	82
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +a+a+s+ks+F+v+Y+Pra +seFv+ ++k++k+++++v++G +++m++e++dss +r+sG+v+g dldp rWpnSkWr+L GAY36924.1 330 VADAISNKSTFDVFYSPRARHSEFVICYQKYMKSIRKPVCIGEKIQMQYEMDDSSGKRCSGVVIGACDLDPNRWPNSKWRCL 411 6899*****************************************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 826 aa Download sequence
METIDAPSET ETDDLNSTEI SDEDDCEGEI ETDDLIFTEI SDKDDGAISQ FILDCFNHIH 60 SCSNLKYHHM LMLCYVRACP SSDYNLLLWQ AFAGPPPSLP KKGDLVVYFP QGHLEYSAPA 120 SVSKAPPTFY LKPEIICRVA DVRYLVSKKT DKVYTKMTLL PLPEMVGENF KGKEIQDLVV 180 DNKRDGEGST ANSTPPLFYK KLRASDQSKK KIVIRAKDAE NVFPFLAHLD YKKQINYSVI 240 AKDVHGVAWK FNFVEVFNIL LGKSRRHYLT GGWKYFVRQK NLVPGDTVIF IRDENNKLRL 300 GIKRSIQAVN DVPGSIIQKH NTYLDVLSPV ADAISNKSTF DVFYSPRARH SEFVICYQKY 360 MKSIRKPVCI GEKIQMQYEM DDSSGKRCSG VVIGACDLDP NRWPNSKWRC LLVRWEEYIG 420 TNCEEMVSPW EIDCSLSLPS MLHSSPRLKR PRTSLQDNLP AYSTTGLEFP ESSITSEGEG 480 TASLINAIDL NRPFDLEPQA PVPKNFLALA LFPDEDKILG IRTGETLESL EIDNLSSLAS 540 FLRSELAATT VKQLKINKCP DLEVLLHRMA YTSLEYLEFS SCLFFSNSKR DYFPTTLKRL 600 KICDCTNAEL ILKVLMDQKG LALESLEVDG CSSLFSLPIN QLPATLRHLR IVNCMNLKSL 660 GESSKIRNCD SVVGPEGESS LENMTSSHTL ELRELEIWDC LELEFLPEDM RNFTDLNLLS 720 ISNCPSLESF PEGGLPNTSL TSLLISECEN LMSLPHQIHK ATSLQDLSVS GCPSLMSFPH 780 GGLPPNLISL GIIDCENLIP LSQWELHKLK HLNKYTILGG LPVLEE

Sequence ? help Back to Top

Protein Sequence Length: 826 aa Download sequence

METIDAPSET ETDDLNSTEI SDEDDCEGEI ETDDLIFTEI SDKDDGAISQ FILDCFNHIH  60
SCSNLKYHHM LMLCYVRACP SSDYNLLLWQ AFAGPPPSLP KKGDLVVYFP QGHLEYSAPA  120
SVSKAPPTFY LKPEIICRVA DVRYLVSKKT DKVYTKMTLL PLPEMVGENF KGKEIQDLVV  180
DNKRDGEGST ANSTPPLFYK KLRASDQSKK KIVIRAKDAE NVFPFLAHLD YKKQINYSVI  240
AKDVHGVAWK FNFVEVFNIL LGKSRRHYLT GGWKYFVRQK NLVPGDTVIF IRDENNKLRL  300
GIKRSIQAVN DVPGSIIQKH NTYLDVLSPV ADAISNKSTF DVFYSPRARH SEFVICYQKY  360
MKSIRKPVCI GEKIQMQYEM DDSSGKRCSG VVIGACDLDP NRWPNSKWRC LLVRWEEYIG  420
TNCEEMVSPW EIDCSLSLPS MLHSSPRLKR PRTSLQDNLP AYSTTGLEFP ESSITSEGEG  480
TASLINAIDL NRPFDLEPQA PVPKNFLALA LFPDEDKILG IRTGETLESL EIDNLSSLAS  540
FLRSELAATT VKQLKINKCP DLEVLLHRMA YTSLEYLEFS SCLFFSNSKR DYFPTTLKRL  600
KICDCTNAEL ILKVLMDQKG LALESLEVDG CSSLFSLPIN QLPATLRHLR IVNCMNLKSL  660
GESSKIRNCD SVVGPEGESS LENMTSSHTL ELRELEIWDC LELEFLPEDM RNFTDLNLLS  720
ISNCPSLESF PEGGLPNTSL TSLLISECEN LMSLPHQIHK ATSLQDLSVS GCPSLMSFPH  780
GGLPPNLISL GIIDCENLIP LSQWELHKLK HLNKYTILGG LPVLEE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60450.1	1e-114	ARF family protein