PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY36783.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C2H2

Protein Properties

Length: 558aa MW: 61641.1 Da PI: 8.5871

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY36783.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11	0.0013	377	399	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC C+k+F ++ +L H +H GAY36783.1 377 FKCLTCNKVFHSPRSLWGHTASH 399 89*****************9988 PP

Sequence ? help Back to Top
Protein Sequence Length: 558 aa Download sequence
MEAANQKKKL FVCKYCNKRY PCGKSLGGHI RTHMNNGNSA EAEGEGEVKL NIDKIFSGRN 60 IKKDSCFEAG GQSGYVLREN PKRTRRFVDS NTLTSQQEMV CKECGKVFQS LKALCGHMAC 120 HSEKDNKMKT SFQDHLEGSD LKQKLVMDSE SDTETSAPSR PRRSKGTGYM TMGAYSSSVD 180 VANGSSSVSE LEQEQEEVAI CLMMLSRDSS GCKKGLNSFA DSSDNNSVVL EAKSSSIDMK 240 ISGANCVPNG NEFVEMNKSN DSKFKSAEID DVSDNSDSGY FRNGPKKAES NASFDGFIRT 300 GKCKKSGVEY GPGFEEFDAK FEKSSNKRTE FGKHLTKEED FALVDRASTK HGSRKRAKND 360 SSSPQIFRNN AQKRSQFKCL TCNKVFHSPR SLWGHTASHS KINGCCESIN ESSENSRETD 420 SFPVPMPNSK FCKSVNGKTP IAQNLSTNVD KRLGSKKSKG HECPFCFRVF KSGQALGGHK 480 RSHFVGGSED KTVVIKQELD EMHGLIDLNL PASVENEIQG YLTEVNVPFV AHTYMRCKKS 540 LEIIEVANAK IFNPEGLK

Sequence ? help Back to Top

Protein Sequence Length: 558 aa Download sequence

MEAANQKKKL FVCKYCNKRY PCGKSLGGHI RTHMNNGNSA EAEGEGEVKL NIDKIFSGRN  60
IKKDSCFEAG GQSGYVLREN PKRTRRFVDS NTLTSQQEMV CKECGKVFQS LKALCGHMAC  120
HSEKDNKMKT SFQDHLEGSD LKQKLVMDSE SDTETSAPSR PRRSKGTGYM TMGAYSSSVD  180
VANGSSSVSE LEQEQEEVAI CLMMLSRDSS GCKKGLNSFA DSSDNNSVVL EAKSSSIDMK  240
ISGANCVPNG NEFVEMNKSN DSKFKSAEID DVSDNSDSGY FRNGPKKAES NASFDGFIRT  300
GKCKKSGVEY GPGFEEFDAK FEKSSNKRTE FGKHLTKEED FALVDRASTK HGSRKRAKND  360
SSSPQIFRNN AQKRSQFKCL TCNKVFHSPR SLWGHTASHS KINGCCESIN ESSENSRETD  420
SFPVPMPNSK FCKSVNGKTP IAQNLSTNVD KRLGSKKSKG HECPFCFRVF KSGQALGGHK  480
RSHFVGGSED KTVVIKQELD EMHGLIDLNL PASVENEIQG YLTEVNVPFV AHTYMRCKKS  540
LEIIEVANAK IFNPEGLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26610.1	1e-58	C2H2 family protein