PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY36680.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

M-type_MADS

Protein Properties

Length: 378aa MW: 42600.1 Da PI: 6.8464

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY36680.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	64.8	8.8e-21	10	53	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + en+ rq t++kR++gi+KKA+ELS+LCd+++ +++fs+tgk GAY36680.1 10 KLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGK 53 6799**************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence
MGRVKLKIKK LENTNGRQAT YAKRKHGIMK KANELSILCD IDIILLMFSP TGKPSLCNGK 60 RSSIEEVIAK FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNVQEFLGTS SQTIEDLTNQ 120 ARLLQSQLSE MHRRLRYWTN PDKINSVEHL GQMENSLRDS LNHLRMHKEN LGKQELMSLE 180 CTTQFQNGIC IPFRMGSEEQ LQTLSWIPNN DNRHMVLPED PNLLSHRDVE CSGSSSFGSY 240 SGYFGPGKSS EISNSGQDSS LLSELSGTQS LRLQLGGQCS YIPYNVSLLN DKFQPVSEMN 300 IQENPVDYHV SGSLEVPRPG FDTTPGSWAS TSGPCEVTLF DERLYSQASS LNSATQLRYK 360 RDFTVQMAEQ VAEEDGHM

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence

MGRVKLKIKK LENTNGRQAT YAKRKHGIMK KANELSILCD IDIILLMFSP TGKPSLCNGK  60
RSSIEEVIAK FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNVQEFLGTS SQTIEDLTNQ  120
ARLLQSQLSE MHRRLRYWTN PDKINSVEHL GQMENSLRDS LNHLRMHKEN LGKQELMSLE  180
CTTQFQNGIC IPFRMGSEEQ LQTLSWIPNN DNRHMVLPED PNLLSHRDVE CSGSSSFGSY  240
SGYFGPGKSS EISNSGQDSS LLSELSGTQS LRLQLGGQCS YIPYNVSLLN DKFQPVSEMN  300
IQENPVDYHV SGSLEVPRPG FDTTPGSWAS TSGPCEVTLF DERLYSQASS LNSATQLRYK  360
RDFTVQMAEQ VAEEDGHM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03060.2	6e-97	M-type_MADS family protein