PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY36626.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

TCP

Protein Properties

Length: 391aa MW: 41747.1 Da PI: 8.0437

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY36626.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	128.9	5e-40	72	177	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........... 88 +k+++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s++ GAY36626.1 72 VPKRTSTKDRHTKVEGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSMSAThlrntyfnpnf 170 689******************************************************************999766666666663333333333333333 PP TCP 89 ......k 89 + GAY36626.1 171 gsqqlmR 177 3333330 PP

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence
MDDKNGIRRP NFPLQLLEKS QQQEASCSFS SSGFPSLTTR IAGGIDDDNN VNEQSSKGFS 60 ESSAAAAAKK PVPKRTSTKD RHTKVEGRGR RIRMPAACAA RVFQLTRELG HKSDGETIEW 120 LLQQAEPAVI AATGTGTIPA NFTSLNISLR SSGSSMSATH LRNTYFNPNF GSQQLMRNMR 180 SEWERTLIDN NCNSLSFPLT GGNVNAMLQS NKQELRDNNT IATTTTSLDV SEADTGMGRK 240 RRPDQELSQN NQMGSYLVQS STGSIPASHS TIPATFWMMT NPSNNQVMSG AGESMWTFPS 300 VSNSNMYRGS MSSGGVHFVN LPTPMALLPG QQLGSGIGSS GGTDSHLGML AALNAYRNIS 360 GAAVSESPAC ASHPHHGAGG DDGQDSTSHH S

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence

MDDKNGIRRP NFPLQLLEKS QQQEASCSFS SSGFPSLTTR IAGGIDDDNN VNEQSSKGFS  60
ESSAAAAAKK PVPKRTSTKD RHTKVEGRGR RIRMPAACAA RVFQLTRELG HKSDGETIEW  120
LLQQAEPAVI AATGTGTIPA NFTSLNISLR SSGSSMSATH LRNTYFNPNF GSQQLMRNMR  180
SEWERTLIDN NCNSLSFPLT GGNVNAMLQS NKQELRDNNT IATTTTSLDV SEADTGMGRK  240
RRPDQELSQN NQMGSYLVQS STGSIPASHS TIPATFWMMT NPSNNQVMSG AGESMWTFPS  300
VSNSNMYRGS MSSGGVHFVN LPTPMALLPG QQLGSGIGSS GGTDSHLGML AALNAYRNIS  360
GAAVSESPAC ASHPHHGAGG DDGQDSTSHH S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	2e-48	TCP family protein