PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY36604.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB

Protein Properties

Length: 446aa MW: 50371.9 Da PI: 6.4488

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY36604.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.3	4.1e-14	23	67	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT++Ed++l + + +G+++W+ Ia+++ +t qc+ rw++yl GAY36604.1 23 TWTQQEDDILREQISIHGTENWSIIASKFK-DKTTRQCRRRWYTYL 67 6**************************9.***********97 PP
2	Myb_DNA-binding	43.8	6.1e-14	73	116	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g W++eEd ll +a k +G++ W+ Ia+ + gRt++ +k+r+ + GAY36604.1 73 KGGWSPEEDMLLCEAQKIFGNR-WTEIAKVVS-GRTDNAVKNRFST 116 688*****************.*****.********976 PP

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence
MQVPKKKIGS NEESKKKERH IVTWTQQEDD ILREQISIHG TENWSIIASK FKDKTTRQCR 60 RRWYTYLNSD FKKGGWSPEE DMLLCEAQKI FGNRWTEIAK VVSGRTDNAV KNRFSTLCKK 120 RAKYEALAKE NNNAYINPNN KRILFQNGFG TDGTPENAAP VKKVRRAHIP DLTENCNFEN 180 RSHRQSGTAA NQHLRSPFTV LPQNFPSITH LPAKYHDAKE VSNDGEPLLQ GFWNSQNNKT 240 QGTFLKKDDP KITALIQQAE LLSSLAQKVN TESTEQSLEN AWKVLQDFLN RSKENDILRC 300 KISDIDLQLE DFKDLIEDLR SSNDESRSSW RHPDLFEDSP ASSEYSTGST LIPRPAGDTT 360 DQIDAELSAL HQAIGTELQS IDIAKQHCLV ERDKGSADSK QGLFTSGGED TNNDGAASTS 420 SSTEFSSPLH VTPLFRSLGD LEDIQI

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence

MQVPKKKIGS NEESKKKERH IVTWTQQEDD ILREQISIHG TENWSIIASK FKDKTTRQCR  60
RRWYTYLNSD FKKGGWSPEE DMLLCEAQKI FGNRWTEIAK VVSGRTDNAV KNRFSTLCKK  120
RAKYEALAKE NNNAYINPNN KRILFQNGFG TDGTPENAAP VKKVRRAHIP DLTENCNFEN  180
RSHRQSGTAA NQHLRSPFTV LPQNFPSITH LPAKYHDAKE VSNDGEPLLQ GFWNSQNNKT  240
QGTFLKKDDP KITALIQQAE LLSSLAQKVN TESTEQSLEN AWKVLQDFLN RSKENDILRC  300
KISDIDLQLE DFKDLIEDLR SSNDESRSSW RHPDLFEDSP ASSEYSTGST LIPRPAGDTT  360
DQIDAELSAL HQAIGTELQS IDIAKQHCLV ERDKGSADSK QGLFTSGGED TNNDGAASTS  420
SSTEFSSPLH VTPLFRSLGD LEDIQI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14350.1	1e-158	MYB family protein