PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY36078.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

SBP

Protein Properties

Length: 798aa MW: 88565.5 Da PI: 7.08

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY36078.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	118	4.8e-37	130	207	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv+gCead+se+k yh+rh+vC +++a++vl++g+++r+CqqC++fh ls+fDe+krsCrr+L++hn+rrr+k+ GAY36078.1 130 RCQVPGCEADISELKGYHKRHRVCLRCANASTVLLDGESKRYCQQCGKFHLLSDFDEGKRSCRRKLERHNNRRRRKSV 207 6*************************************************************************9875 PP

Sequence ? help Back to Top
Protein Sequence Length: 798 aa Download sequence
MERDGVERPR IPEMEVHPAM VTEADPSASA LWDWSDLLDF TTDDHFNLPL DPAQLELNPL 60 LEPQPEPPVV NNLERVRKRD PRLTCSNFLA GRIPCACPEL DEMLEEQEAG LPGKKRARTV 120 RAGHGQGKAR CQVPGCEADI SELKGYHKRH RVCLRCANAS TVLLDGESKR YCQQCGKFHL 180 LSDFDEGKRS CRRKLERHNN RRRRKSVDSK GAVDSEPPGA SRCEDIICDD DSGKDSLCLS 240 SQITDQEAFL ESEDGLVSAL NSAPNTQNVN SDSGISAVAS GEIRTERGKD DSKASLSPSN 300 CDNKSSYSSL CPTGRISFKL YDWNPAEFPR RLRHQIFHWL ASMPVELEGY IRPGCTILTV 360 FIAMPKIMWA KLYEDPIRYV HNFVVEPGTA SMLSGRGSMF VHLNNMIFHV KGGTSVVKAD 420 VKVQAPKLHY VQPSCFEAGK PLEFVACGSN LIQPKLRFLI SFAGKYLPHD YCIVSPLGGS 480 EGESLALEHQ FYKINVPHIE ANLFGPAFIE VENESGLSNF IPVMIGDKGT CSEIKIIQQR 540 FEASFFSKRS QFMASGLLSD LCEVSALRQK ALTELLVDIA WLLKAPASES FRQTISSSEV 600 QRFNQLLSFL IYNESTTILE KMLQNMKILM NNIESNIAVN GISDSDMGLL LKYMDYARGI 660 LCQKVKKDEG PMQHSGNIVP KMISSSQSCL QANSLVPSTK QDLRSNDKIG AVMDSATVDR 720 CEVVPLLNRE VVMNVNLIKE LPRKSCSPIF SGRVLSSLPT VTVIAMAAVC FGVCLVVLHP 780 QKVGHFATSI RRSLFGNL

Sequence ? help Back to Top

Protein Sequence Length: 798 aa Download sequence

MERDGVERPR IPEMEVHPAM VTEADPSASA LWDWSDLLDF TTDDHFNLPL DPAQLELNPL  60
LEPQPEPPVV NNLERVRKRD PRLTCSNFLA GRIPCACPEL DEMLEEQEAG LPGKKRARTV  120
RAGHGQGKAR CQVPGCEADI SELKGYHKRH RVCLRCANAS TVLLDGESKR YCQQCGKFHL  180
LSDFDEGKRS CRRKLERHNN RRRRKSVDSK GAVDSEPPGA SRCEDIICDD DSGKDSLCLS  240
SQITDQEAFL ESEDGLVSAL NSAPNTQNVN SDSGISAVAS GEIRTERGKD DSKASLSPSN  300
CDNKSSYSSL CPTGRISFKL YDWNPAEFPR RLRHQIFHWL ASMPVELEGY IRPGCTILTV  360
FIAMPKIMWA KLYEDPIRYV HNFVVEPGTA SMLSGRGSMF VHLNNMIFHV KGGTSVVKAD  420
VKVQAPKLHY VQPSCFEAGK PLEFVACGSN LIQPKLRFLI SFAGKYLPHD YCIVSPLGGS  480
EGESLALEHQ FYKINVPHIE ANLFGPAFIE VENESGLSNF IPVMIGDKGT CSEIKIIQQR  540
FEASFFSKRS QFMASGLLSD LCEVSALRQK ALTELLVDIA WLLKAPASES FRQTISSSEV  600
QRFNQLLSFL IYNESTTILE KMLQNMKILM NNIESNIAVN GISDSDMGLL LKYMDYARGI  660
LCQKVKKDEG PMQHSGNIVP KMISSSQSCL QANSLVPSTK QDLRSNDKIG AVMDSATVDR  720
CEVVPLLNRE VVMNVNLIKE LPRKSCSPIF SGRVLSSLPT VTVIAMAAVC FGVCLVVLHP  780
QKVGHFATSI RRSLFGNL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	192	204	RRKLERHNNRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18830.1	0.0	SBP family protein