PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY35955.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GRAS
Protein Properties Length: 437aa    MW: 49008.9 Da    PI: 4.8975
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY35955.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS236.89.1e-73853373248
        GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                 +lL+e A+a+++++ +++q+l++ l+el+sp+gd+ q+l +yf++AL  r+++s++++y++l++ ++++ + +++ +++  f+evsP+ +f+h+++N a
  GAY35955.1  85 DLLIETARAIADKNSARVQQLMWMLNELSSPYGDTDQKLSSYFLQALFGRMTDSGERCYRTLSSASDKTCSFESTRKMVLKFQEVSPWTTFGHVACNGA 183
                 79************************************************************9988886665555555566****************** PP

        GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..........skeeleetgerLakfAeelgvpfefnvlvak.rledl 189
                 I+ea+ege+++Hi+D++ ++++QWp+Ll+aLa+R++++p+lR+T+v+ ++++           ++ ++e+g+r++kfA+ +gvpfefnv+++  ++ dl
  GAY35955.1 184 IMEAFEGESKLHIVDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTSKPVggsgagglaaVQKVMKEIGNRMEKFARLMGVPFEFNVIHHVgDFCDL 282
                 ************************************************998899*******9999************************96666***** PP

        GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh 248
                 +l eL+v+++Eala+n++ +lh++     +++++rd +++ ++sl+P++++vve+e+d+
  GAY35955.1 283 NLAELDVRSDEALAINCIGALHTIA----AVDDRRDVLISNLRSLQPRIITVVEEEVDL 337
                 ************************8....888899*********************997 PP
2GRAS24.82.5e-08375418292335
        GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaak 335
                  +iv++vac+ +e++er+et+ +W+ rl+ aGF+p  +s++a  
  GAY35955.1 375 XAIVDLVACQPSESTERRETATRWSGRLHGAGFSPFMFSDEASF 418
                 579***********************************999865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    
SSRSSKQNNH YQTAEEEECF NFFMDEEDFS SSSSKQHYYP YHQPHHSTPT TTATTTTTSS  60
TPPHQPNFDP TLDFSFEFSA NWANDLLIET ARAIADKNSA RVQQLMWMLN ELSSPYGDTD  120
QKLSSYFLQA LFGRMTDSGE RCYRTLSSAS DKTCSFESTR KMVLKFQEVS PWTTFGHVAC  180
NGAIMEAFEG ESKLHIVDIS NTYCTQWPTL LEALATRTDD TPHLRLTTVV TSKPVGGSGA  240
GGLAAVQKVM KEIGNRMEKF ARLMGVPFEF NVIHHVGDFC DLNLAELDVR SDEALAINCI  300
GALHTIAAVD DRRDVLISNL RSLQPRIITV VEEEVDLDVG IDGLEFVXXX XXXXXXXXXX  360
XXXXXXXXXX XXXXXAIVDL VACQPSESTE RRETATRWSG RLHGAGFSPF MFSDEASFFR  420
AFLLSFTLAM TSNNNKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-144GRAS family protein