PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY35720.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GRAS
Protein Properties Length: 533aa    MW: 60190.1 Da    PI: 6.566
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY35720.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS251.63e-77553871338
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl....fsevsPilkfs 94 
                 lv+lL+ cAe + s+++ +a++lL + ++ +s+ g++++R+++yf++AL++r +r +++ ++k ++ +e +  + +e++ +l+      ++ s +++ +
  GAY35720.1  55 LVHLLILCAEKIGSQQFDRASTLLDHCENFSSKIGNSVERVVHYFVKALQERFNReTGKITSKRVKGEEIKLLQPEETILSLRPalvaCYKESSFYQAT 153
                 689****************************************************4445555556666666555555555554345565666779999* PP

        GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                  ++  qaI e v++++r+H iD+ i  G + + L+qaLa+R+e p   l+iT+vgs   +sk+++eetg+rLa fAe+ ++pf+f+++++++++dl+ +
  GAY35720.1 154 LFAGTQAIIERVASAKRIHLIDLAIRSGSHCMVLMQALATRQECPVkLLKITAVGS---SSKQRMEETGKRLAYFAETWNLPFSFKIVMVTETKDLNED 249
                 ******************************************7665499*******...58************************************** PP

        GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291
                 +++++ gEa+aV + + l r+         + d ++k+++++sP v+v++e ea+hns++F +rf+e l +ysa fd+l+++++r + er++ E+++lg
  GAY35720.1 250 KFDLNAGEAVAVYSPILLSRTR--------HPDFLIKMLRKISPCVMVIIEVEANHNSQNFEDRFFEVLFHYSASFDCLKVSMARCDPERVTFEEMYLG 340
                 ****************888886........457899*************************************************************** PP

        GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338
                 ++i+n++a+eg+er+ rh +   Wr+ ++++G+ +++ls++   qa+
  GAY35720.1 341 QHIRNIIATEGEERIFRHMKIDAWRKFFHRFGMVEAELSTSSLFQAE 387
                 *******************************************9997 PP
2GRAS21.52.6e-07461533130204
        GRAS 130 qaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaV 204
                 q La+R+e p   l+ T+v     +sk+++eetg+  a fAe+l++pf+ ++  a+++ dl+   +++++gE laV
  GAY35720.1 461 QPLATRQECPLeLLKATAVRT---TSKQKVEETGKMFAYFAETLNLPFSSKIAFATETRDLRKGIFELNTGEELAV 533
                 67999996655499******9...68**************************9999******************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    
MAGFRELSTV DVIRAATAIY LQSSSHSSSN LSLLYHFCGG SAINISEEES KDVELVHLLI  60
LCAEKIGSQQ FDRASTLLDH CENFSSKIGN SVERVVHYFV KALQERFNRE TGKITSKRVK  120
GEEIKLLQPE ETILSLRPAL VACYKESSFY QATLFAGTQA IIERVASAKR IHLIDLAIRS  180
GSHCMVLMQA LATRQECPVK LLKITAVGSS SKQRMEETGK RLAYFAETWN LPFSFKIVMV  240
TETKDLNEDK FDLNAGEAVA VYSPILLSRT RHPDFLIKML RKISPCVMVI IEVEANHNSQ  300
NFEDRFFEVL FHYSASFDCL KVSMARCDPE RVTFEEMYLG QHIRNIIATE GEERIFRHMK  360
IDAWRKFFHR FGMVEAELST SSLFQAELDN SFLPVVQLLM VCAEKIGSQQ FDHASILLDD  420
FENFSSKAVT QYAGMQAIAE NVASAKRVIS LTLQSEVEHT QPLATRQECP LELLKATAVR  480
TTSKQKVEET GKMFAYFAET LNLPFSSKIA FATETRDLRK GIFELNTGEE LAV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-43GRAS family protein