PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY35555.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

SBP

Protein Properties

Length: 1009aa MW: 111916 Da PI: 7.9911

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY35555.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	72.9	5.7e-23	149	213	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C+adls+ak+yhrrhkvC++hska+++lv +++qrfCqqCs sCrrrLa+hn+rrrk+++ GAY35555.1 149 VCQVEDCRADLSNAKDYHRRHKVCDMHSKATKALVGNVMQRFCQQCS-------------SCRRRLAGHNKRRRKTHP 213 6*******************************************9.............9************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 1009 aa Download sequence
MEAKFGGKVQ NFYGPVVSDL KTVGKKTLEW DLNDWKWDGD LFTASPLNSA PSDCRNRQLF 60 PVGPEIPANG AQSNCSSSSS EDNNVGNEKG KREMEKRRRV VVVEDDELIN DQGGLLNLKL 120 GGRVYPVTDG DAKSGKKTKI VGTTANRAVC QVEDCRADLS NAKDYHRRHK VCDMHSKATK 180 ALVGNVMQRF CQQCSSCRRR LAGHNKRRRK THPDNVVNGG SLNDERSTNN SDQTKDQDLL 240 SHLFRNLAGV VGTSNVRNLS GLLQGSQGLL NAGPSNGNVE KVPDLVSTGP EPSRPSTSAC 300 MTDNRIGFSE PMRSVGQCGT VPASDLLQKK ISTNDAHSGR VQALSASQSI EMFPSRSSFS 360 AKANEPEATF GRSKMSNIDL NNVYDDSQER VENLELSHAP VNPGPVSLYS PLWLHPGSNK 420 SSPPQASANS DSTSSQSQSS SSGEAQSRTD RIVFKLFGKD PNDFPLVLRR QILDWLSHSP 480 TDIESYIRPG CIVLTIYLRL GKPTWEELCC DLGSSLRRLL EGSDDSFWRT GWLYARVQHS 540 VAFIYNGQVV LDTPLLLKSH KSCRISSIKP IAVPVSERVK FVVKGFNLSR STTRLLCAIE 600 GSYLVQETCY DLMGGADTVN ENDELQCLSF PCSIPNVFGR GFIEVEDHGL SSSFVPFIVA 660 EQEVCSEICM LESAIEAAEI SDDFQKIAEK TEVKNQALDF LHEMGWLLHR SHMKFRLGHL 720 HPNFYFFPFK RFKWLLEFSM EHDWCAVVKK LLGILFDGTV DTGDHTSSEL AILEMGLLHK 780 AVRRNCRPMV ELLLNYAPDN VLDKPGSRQK QLVDRAHSGF IFKPNVIGPA GLTPLHVAAC 840 RDDAENVLDA LTDDPGSVGI EAWKSAQDST GLTPNDYASL RAHHSYIHLV QRKINKKSSE 900 SGRVILDIPG SIVDWDSKQK PSNGNKSSRV LSLQTEKIMT KVMQQQCRLC EQKVAYRNMR 960 SSLVYRPVML SMVAIAAVCV CVALLFKSSP EVLYIFRPFR WELLKYGSS

Sequence ? help Back to Top

Protein Sequence Length: 1009 aa Download sequence

MEAKFGGKVQ NFYGPVVSDL KTVGKKTLEW DLNDWKWDGD LFTASPLNSA PSDCRNRQLF  60
PVGPEIPANG AQSNCSSSSS EDNNVGNEKG KREMEKRRRV VVVEDDELIN DQGGLLNLKL  120
GGRVYPVTDG DAKSGKKTKI VGTTANRAVC QVEDCRADLS NAKDYHRRHK VCDMHSKATK  180
ALVGNVMQRF CQQCSSCRRR LAGHNKRRRK THPDNVVNGG SLNDERSTNN SDQTKDQDLL  240
SHLFRNLAGV VGTSNVRNLS GLLQGSQGLL NAGPSNGNVE KVPDLVSTGP EPSRPSTSAC  300
MTDNRIGFSE PMRSVGQCGT VPASDLLQKK ISTNDAHSGR VQALSASQSI EMFPSRSSFS  360
AKANEPEATF GRSKMSNIDL NNVYDDSQER VENLELSHAP VNPGPVSLYS PLWLHPGSNK  420
SSPPQASANS DSTSSQSQSS SSGEAQSRTD RIVFKLFGKD PNDFPLVLRR QILDWLSHSP  480
TDIESYIRPG CIVLTIYLRL GKPTWEELCC DLGSSLRRLL EGSDDSFWRT GWLYARVQHS  540
VAFIYNGQVV LDTPLLLKSH KSCRISSIKP IAVPVSERVK FVVKGFNLSR STTRLLCAIE  600
GSYLVQETCY DLMGGADTVN ENDELQCLSF PCSIPNVFGR GFIEVEDHGL SSSFVPFIVA  660
EQEVCSEICM LESAIEAAEI SDDFQKIAEK TEVKNQALDF LHEMGWLLHR SHMKFRLGHL  720
HPNFYFFPFK RFKWLLEFSM EHDWCAVVKK LLGILFDGTV DTGDHTSSEL AILEMGLLHK  780
AVRRNCRPMV ELLLNYAPDN VLDKPGSRQK QLVDRAHSGF IFKPNVIGPA GLTPLHVAAC  840
RDDAENVLDA LTDDPGSVGI EAWKSAQDST GLTPNDYASL RAHHSYIHLV QRKINKKSSE  900
SGRVILDIPG SIVDWDSKQK PSNGNKSSRV LSLQTEKIMT KVMQQQCRLC EQKVAYRNMR  960
SSLVYRPVML SMVAIAAVCV CVALLFKSSP EVLYIFRPFR WELLKYGSS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	96	100	KRRRV
2	206	212	KRRRKTH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	SBP family protein