PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY35553.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

SBP

Protein Properties

Length: 1022aa MW: 113559 Da PI: 7.9932

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY35553.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.2	7.5e-41	149	226	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C+adls+ak+yhrrhkvC++hska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ GAY35553.1 149 VCQVEDCRADLSNAKDYHRRHKVCDMHSKATKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHP 226 6**************************************************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 1022 aa Download sequence
MEAKFGGKVQ NFYGPVVSDL KTVGKKTLEW DLNDWKWDGD LFTASPLNSA PSDCRNRQLF 60 PVGPEIPANG AQSNCSSSSS EDNNVGNEKG KREMEKRRRV VVVEDDELIN DQGGLLNLKL 120 GGRVYPVTDG DAKSGKKTKI VGTTANRAVC QVEDCRADLS NAKDYHRRHK VCDMHSKATK 180 ALVGNVMQRF CQQCSRFHVL QEFDEGKRSC RRRLAGHNKR RRKTHPDNVV NGGSLNDERS 240 TNNSDQTKDQ DLLSHLFRNL AGVVGTSNVR NLSGLLQGSQ GLLNAGPSNG NVEKVPDLVS 300 TGPEPSRPST SACMTDNRIG FSEPMRSVGQ CGTVPASDLL QKKISTNDAH SGRVQALSAS 360 QSIEMFPSRS SFSAKANEPE ATFGRSKMSN IDLNNVYDDS QERVENLELS HAPVNPGPVS 420 LYSPLWLHPG SNKSSPPQAS ANSDSTSSQS QSSSSGEAQS RTDRIVFKLF GKDPNDFPLV 480 LRRQILDWLS HSPTDIESYI RPGCIVLTIY LRLGKPTWEE LCCDLGSSLR RLLEGSDDSF 540 WRTGWLYARV QHSVAFIYNG QVVLDTPLLL KSHKSCRISS IKPIAVPVSE RVKFVVKGFN 600 LSRSTTRLLC AIEGSYLVQE TCYDLMGGAD TVNENDELQC LSFPCSIPNV FGRGFIEVED 660 HGLSSSFVPF IVAEQEVCSE ICMLESAIEA AEISDDFQKI AEKTEVKNQA LDFLHEMGWL 720 LHRSHMKFRL GHLHPNFYFF PFKRFKWLLE FSMEHDWCAV VKKLLGILFD GTVDTGDHTS 780 SELAILEMGL LHKAVRRNCR PMVELLLNYA PDNVLDKPGS RQKQLVDRAH SGFIFKPNVI 840 GPAGLTPLHV AACRDDAENV LDALTDDPGS VGIEAWKSAQ DSTGLTPNDY ASLRAHHSYI 900 HLVQRKINKK SSESGRVILD IPGSIVDWDS KQKPSNGNKS SRVLSLQTEK IMTKVMQQQC 960 RLCEQKVAYR NMRSSLVYRP VMLSMVAIAA VCVCVALLFK SSPEVLYIFR PFRWELLKYG 1020 SS

Sequence ? help Back to Top

Protein Sequence Length: 1022 aa Download sequence

MEAKFGGKVQ NFYGPVVSDL KTVGKKTLEW DLNDWKWDGD LFTASPLNSA PSDCRNRQLF  60
PVGPEIPANG AQSNCSSSSS EDNNVGNEKG KREMEKRRRV VVVEDDELIN DQGGLLNLKL  120
GGRVYPVTDG DAKSGKKTKI VGTTANRAVC QVEDCRADLS NAKDYHRRHK VCDMHSKATK  180
ALVGNVMQRF CQQCSRFHVL QEFDEGKRSC RRRLAGHNKR RRKTHPDNVV NGGSLNDERS  240
TNNSDQTKDQ DLLSHLFRNL AGVVGTSNVR NLSGLLQGSQ GLLNAGPSNG NVEKVPDLVS  300
TGPEPSRPST SACMTDNRIG FSEPMRSVGQ CGTVPASDLL QKKISTNDAH SGRVQALSAS  360
QSIEMFPSRS SFSAKANEPE ATFGRSKMSN IDLNNVYDDS QERVENLELS HAPVNPGPVS  420
LYSPLWLHPG SNKSSPPQAS ANSDSTSSQS QSSSSGEAQS RTDRIVFKLF GKDPNDFPLV  480
LRRQILDWLS HSPTDIESYI RPGCIVLTIY LRLGKPTWEE LCCDLGSSLR RLLEGSDDSF  540
WRTGWLYARV QHSVAFIYNG QVVLDTPLLL KSHKSCRISS IKPIAVPVSE RVKFVVKGFN  600
LSRSTTRLLC AIEGSYLVQE TCYDLMGGAD TVNENDELQC LSFPCSIPNV FGRGFIEVED  660
HGLSSSFVPF IVAEQEVCSE ICMLESAIEA AEISDDFQKI AEKTEVKNQA LDFLHEMGWL  720
LHRSHMKFRL GHLHPNFYFF PFKRFKWLLE FSMEHDWCAV VKKLLGILFD GTVDTGDHTS  780
SELAILEMGL LHKAVRRNCR PMVELLLNYA PDNVLDKPGS RQKQLVDRAH SGFIFKPNVI  840
GPAGLTPLHV AACRDDAENV LDALTDDPGS VGIEAWKSAQ DSTGLTPNDY ASLRAHHSYI  900
HLVQRKINKK SSESGRVILD IPGSIVDWDS KQKPSNGNKS SRVLSLQTEK IMTKVMQQQC  960
RLCEQKVAYR NMRSSLVYRP VMLSMVAIAA VCVCVALLFK SSPEVLYIFR PFRWELLKYG  1020
SS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	96	100	KRRRV
2	219	225	KRRRKTH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	SBP family protein