PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY34640.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

WOX

Protein Properties

Length: 406aa MW: 45076.7 Da PI: 8.7915

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY34640.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.1	1.3e-17	58	118	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++++eq+++Le+ F++ +p ++e++++ ++l ++ +++V++WFqNr+ + k+ GAY34640.1 58 KPRWNPKPEQIRILESIFNSgMVNPPRDEIRRIRAQLqeygQVGDANVFYWFQNRKSRSKH 118 89***************99***********************************995 PP
2	Wus_type_Homeobox	113.1	1.4e-36	57	119	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +++RW+P+peQi+iLe++++sG+++P+++ei+ri+a+L+eyG+++d+NVfyWFQNrk+R+++k GAY34640.1 57 PKPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 119 689**********************************************************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence
MASSNRNWPS MFKSKPYNTH HHQWQQRDVN SSSLMSNGTH RPSYTTVPGC EERSPEPKPR 60 WNPKPEQIRI LESIFNSGMV NPPRDEIRRI RAQLQEYGQV GDANVFYWFQ NRKSRSKHKL 120 RHIQNSKQQQ SQQTNQMITS VATTITAPSS SSSSSEKSSP TTGSIKRLSL SSPNVIDVSN 180 SPTGSVNQTC FQTHNEFLTE PFFLPIQQTG EGGQGFGFSE LPNVVQVNQQ QLIGPCTSLL 240 LSEIMNHGAT KKEQEDTIWK IQPQQLSNYA ATTVPSILSI APPPLPTTTV TVPSTINPIQ 300 GVEESDPVVG HGGTARSTVF INDVAFEVAA GPFNVREAFG EDAVLINSSG QPVLTNEWGV 360 TLRSLNHGAF YYLVRTFSCM EALKVWKLRR LGVLCLSCFH SLLSFS

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence

MASSNRNWPS MFKSKPYNTH HHQWQQRDVN SSSLMSNGTH RPSYTTVPGC EERSPEPKPR  60
WNPKPEQIRI LESIFNSGMV NPPRDEIRRI RAQLQEYGQV GDANVFYWFQ NRKSRSKHKL  120
RHIQNSKQQQ SQQTNQMITS VATTITAPSS SSSSSEKSSP TTGSIKRLSL SSPNVIDVSN  180
SPTGSVNQTC FQTHNEFLTE PFFLPIQQTG EGGQGFGFSE LPNVVQVNQQ QLIGPCTSLL  240
LSEIMNHGAT KKEQEDTIWK IQPQQLSNYA ATTVPSILSI APPPLPTTTV TVPSTINPIQ  300
GVEESDPVVG HGGTARSTVF INDVAFEVAA GPFNVREAFG EDAVLINSSG QPVLTNEWGV  360
TLRSLNHGAF YYLVRTFSCM EALKVWKLRR LGVLCLSCFH SLLSFS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33880.1	3e-58	WOX family protein