PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY34024.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ARF
Protein Properties Length: 899aa    MW: 99437.9 Da    PI: 6.6536
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY34024.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.71.1e-23127228199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +l
  GAY34024.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNDKNQL 221
                 99*****************************8544444..48************************************************..7888889 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +++++r+
  GAY34024.1 222 LLGIRRA 228
                 ****997 PP
2Auxin_resp119.92e-39253336183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+t+s F+++YnPras+seFv++++k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpv+WpnS+Wrs+k
  GAY34024.1 253 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYIKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVKWPNSHWRSVK 336
                 79*********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 899 aa     Download sequence    
MRLSTAGFSP QHQEGEKRVL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAASTNKE  60
VDAHIPNYPS LPPQLICQLH NVTMHADIET DEVYAQMTLQ PLSPQEQKEA YLPAELGTLS  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHDNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNDKNQ LLLGIRRANR PPTVMPSSVL  240
SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYIKAVYHT RVSVGMRFRM  300
LFETEESSVR RYMGTITGIS DLDPVKWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  360
TFPMYSSPFP LRLKRPWPVG LPAFHGIKDE DLGINSQLMW LRGDGDRGMQ SLNFQGLGVT  420
PWMQPRMDAS MLGLQNDMYQ AMAAAALREM RAVDPSKPNA ASLMQFQQPQ NLPSRTSALV  480
QSQMLQQSHP QQTFLQGVQE NQHQSQSQTH SQSHLLQPQL QHSHSFNNQQ QQPLPQPQQQ  540
VDHQQIPSAV SAMSQFASVS QSQSPPMQAI SSLCQQQSFS DSNGNPATNP IVSPLHSLLG  600
SYAQDESSHL LNLPRSNPLI HSPTWPSKRA AVEPLFSSGA PQCVLPSVEQ LGPPHANISQ  660
NSISLPPFPG RECSIDQEVS ADPQSHLLFG VNIEPSSLLM QNEMSSLGGV GSNSDSTTIP  720
FASSNYMSTA GADFSVNPEI APSSCIDESG FLQSPENVGQ VNPPNRTFVK VYKSGSFGRS  780
LDITKFSSYH ELRSELARMF GLEGHLEDPL RSGWQLVFVD RENDVLLLGD GPWPEFVNSV  840
WCIKILSPPE VQQMGKRGNE LLNSVPIQRL SNSSCDDYAT RQDSRNLSAG ITSVGSLDF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0ARF family protein