PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GAY33211.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | C3H | ||||||||
Protein Properties | Length: 190aa MW: 22092.4 Da PI: 8.8315 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.6 | 4.5e-08 | 52 | 79 | 1 | 26 |
--S---SGGGGTS..--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartG..tCkyGdrCkFaHg 26 +k ++C ++++ tC++G C+F+H+ GAY33211.1 52 WKIAICGEYMKSRlkTCSRGMACNFIHC 79 7889***********************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence |
MTVCRNGSSH LRGSVYVHYK SLESAILAYH SVNGCYFTGK QITCEFINVT RWKIAICGEY 60 MKSRLKTCSR GMACNFIHCF RNPSGDYEWA DWDKPPPRYW VKKMAALFGY SDESGTWNQE 120 RSDSTNADRH HYKRSRSREA DRVKSGSGIS QDDERQVHKT TWSRRRSNYH SESRSDEANS 180 DGSWSDMDRD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 133 | 138 | KRSRSR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10320.1 | 3e-68 | C3H family protein |