PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY33009.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GRAS
Protein Properties Length: 572aa    MW: 62956.4 Da    PI: 6.3478
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY33009.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS384.51.3e-1172105711373
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++lL++cA+a+s+++ +  ++l+++ +  +s +g+p+qRl ay++ +         s++y+al+++e +   s++ l+++++++e++P+lkf++++aN
  GAY33009.1 210 LKQLLIACAKALSENNINDFDKLIEKARGAVSISGEPIQRLGAYMKSG---------SNIYRALRCREPE---SKDLLSYMHILYEICPYLKFGYMAAN 296
                 689*****************************************9865.........56888*******9...99************************ PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  aI ea ++e+++HiiDf+i qG+QW++LlqaLa++p+g+p++RiTg+++p s+  + + le++g+rLa + +++++ +efn+ +     d++l++L v
  GAY33009.1 297 GAIAEACKTEDCIHIIDFQIAQGTQWMTLLQALAAKPSGAPRVRITGIDDPVSKyaRGDGLEAVGRRLAAISQKFNILVEFNP-IPVFAPDVTLDMLGV 394
                 ***************************************************999999**************************.6888999******** PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 +pgEalaVn+ lqlh+++desv+l+++rd +L+++ksl+Pkvv++veqe+++n++ Fl rf+e+l+yy a+f+s+++++pr+++eri+vE+++l+r+iv
  GAY33009.1 395 RPGEALAVNFPLQLHHTPDESVDLNNPRDGLLRMIKSLNPKVVTLVEQESNTNTAAFLPRFVETLNYYLAMFESIDVTMPRDQKERINVEQHCLARDIV 493
                 *************************************************************************************************** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW.kdrpLvsvSaW 373
                 nv+aceg+er+erhe l+kW++r+++aGF++ pls ++++ ++ llr ++ + y++ e +g+++lg  k   Lvs+SaW
  GAY33009.1 494 NVIACEGRERVERHELLGKWKSRFTMAGFRQCPLSPYVNSVIRNLLRFYS-EHYTLVEMDGAMLLGAgKIGLLVSASAW 571
                 **********************************************9999.66***********9852567899***** PP
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    
MDSRQIIGCG VTSAGISYSS SCPTVPSIPN RLFGPLKFDV GNSPNSPFSN QFECDTITSL  60
SDSQEQHSPS DNPSGLSPSC DSSLESNSYF HQLSPAVDSL ILFSGGTSYL QNANSSQKIK  120
HVLQELETVL MGPDEEEAAK PNTSYGGSSK PQAPGHRPRS WSQEHHGSHV IQPQPSFISR  180
YRQSAEGAQI ENSQMAIGES SLQGFPSGNL KQLLIACAKA LSENNINDFD KLIEKARGAV  240
SISGEPIQRL GAYMKSGSNI YRALRCREPE SKDLLSYMHI LYEICPYLKF GYMAANGAIA  300
EACKTEDCIH IIDFQIAQGT QWMTLLQALA AKPSGAPRVR ITGIDDPVSK YARGDGLEAV  360
GRRLAAISQK FNILVEFNPI PVFAPDVTLD MLGVRPGEAL AVNFPLQLHH TPDESVDLNN  420
PRDGLLRMIK SLNPKVVTLV EQESNTNTAA FLPRFVETLN YYLAMFESID VTMPRDQKER  480
INVEQHCLAR DIVNVIACEG RERVERHELL GKWKSRFTMA GFRQCPLSPY VNSVIRNLLR  540
FYSEHYTLVE MDGAMLLGAG KIGLLVSASA WH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.11e-173GRAS family protein