PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY33007.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GRAS
Protein Properties Length: 604aa    MW: 66365.1 Da    PI: 6.2404
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY33007.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS384.31.5e-1172426031373
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++lL++cA+a+s+++ +  ++l+++ +  +s +g+p+qRl ay++ +         s++y+al+++e +   s++ l+++++++e++P+lkf++++aN
  GAY33007.1 242 LKQLLIACAKALSENNINDFDKLIEKARGAVSISGEPIQRLGAYMKSG---------SNIYRALRCREPE---SKDLLSYMHILYEICPYLKFGYMAAN 328
                 689*****************************************9865.........56888*******9...99************************ PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  aI ea ++e+++HiiDf+i qG+QW++LlqaLa++p+g+p++RiTg+++p s+  + + le++g+rLa + +++++ +efn+ +     d++l++L v
  GAY33007.1 329 GAIAEACKTEDCIHIIDFQIAQGTQWMTLLQALAAKPSGAPRVRITGIDDPVSKyaRGDGLEAVGRRLAAISQKFNILVEFNP-IPVFAPDVTLDMLGV 426
                 ***************************************************999999**************************.6888999******** PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 +pgEalaVn+ lqlh+++desv+l+++rd +L+++ksl+Pkvv++veqe+++n++ Fl rf+e+l+yy a+f+s+++++pr+++eri+vE+++l+r+iv
  GAY33007.1 427 RPGEALAVNFPLQLHHTPDESVDLNNPRDGLLRMIKSLNPKVVTLVEQESNTNTAAFLPRFVETLNYYLAMFESIDVTMPRDQKERINVEQHCLARDIV 525
                 *************************************************************************************************** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW.kdrpLvsvSaW 373
                 nv+aceg+er+erhe l+kW++r+++aGF++ pls ++++ ++ llr ++ + y++ e +g+++lg  k   Lvs+SaW
  GAY33007.1 526 NVIACEGRERVERHELLGKWKSRFTMAGFRQCPLSPYVNSVIRNLLRFYS-EHYTLVEMDGAMLLGAgKIGLLVSASAW 603
                 **********************************************9999.66***********9852567899***** PP
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    
MDSRQIIGCG VTSAGISYSS SCPTVPSIPN RLFGPLKFDV GNSPNSPFSN QFECDTITSL  60
SDSQEQHSPS DNPSGLSPSC DSSLESNSYF HQLSPAVDSL ILFSGGTSYL QNANSSQKIK  120
HVLQELETVL MGPDEEEAAK PNTSYGGSSK PQAPGHRPRS WSQEHHGSHV IQPQPSFISR  180
YRQSAEGAQI ENSQMAIGES SLQGFPSGNL KQYRQSAEGA QIENSQMAIG ESSLQGFPSG  240
NLKQLLIACA KALSENNIND FDKLIEKARG AVSISGEPIQ RLGAYMKSGS NIYRALRCRE  300
PESKDLLSYM HILYEICPYL KFGYMAANGA IAEACKTEDC IHIIDFQIAQ GTQWMTLLQA  360
LAAKPSGAPR VRITGIDDPV SKYARGDGLE AVGRRLAAIS QKFNILVEFN PIPVFAPDVT  420
LDMLGVRPGE ALAVNFPLQL HHTPDESVDL NNPRDGLLRM IKSLNPKVVT LVEQESNTNT  480
AAFLPRFVET LNYYLAMFES IDVTMPRDQK ERINVEQHCL ARDIVNVIAC EGRERVERHE  540
LLGKWKSRFT MAGFRQCPLS PYVNSVIRNL LRFYSEHYTL VEMDGAMLLG AGKIGLLVSA  600
SAWH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.11e-171GRAS family protein