PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GAY32786.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 220aa MW: 25035.3 Da PI: 5.1117 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 69.5 | 3e-22 | 17 | 65 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 kr+e ks rqvtfskR++g++ KA+EL+vLC+aeva++i+s++ + +++ GAY32786.1 17 KRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTF 65 7899**************************************9999988 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence |
MEASKQKNKG LQKIEIKRVE RKSARQVTFS KRKKGLFNKA SELCVLCGAE VAIVIMSPHK 60 RAFTFGHPNP DDVLDRFLTG VDAKSSLAAT TVEDDEKLER LKQEYVELLN RLKEEEKKRD 120 EIAKKRGNDG ANGVFWWDQY SIDDMERDEL ELYLKSLEKL KTSVKSKVDE LAAASQASNN 180 FVNQFNIDNN VPIDFGSEFD DLCCLLEGTN EDGILRNLDL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 1e-27 | M-type_MADS family protein |