PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY32582.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

SBP

Protein Properties

Length: 386aa MW: 40714 Da PI: 9.2772

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY32582.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	137.2	4.9e-43	86	162	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +CqvegC++dls+ak y++rhkvC +hsk+pvv+v+gleqrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk++ GAY32582.1 86 RCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPVVTVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPT 162 6**************************************************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence
MELGSDYLAE SGGGSGSGSG LSSAEPSLNG LKFGKKIYFE DVGTAGAPFP GSGSSSGSGS 60 GSGSGSGRKV RGGGGGMVTS GQQPPRCQVE GCKVDLSDAK AYYSRHKVCG MHSKSPVVTV 120 AGLEQRFCQQ CSRFHQLPEF DQGKRSCRRR LAGHNERRRK PTSGPFLGTR YGRLSSSVIE 180 NSSQGGGFLI DFSAYQMVGG RDGWPVTSVS KQVSGNQTTV TARHLPQPLW QNHSQDPPPD 240 RYLQCSTAGT GFSGPGIPCG GCFTGVADSN CALSLLSNQP WGSKNQTPGH GVGDLMHAHT 300 KSVTQPVSPR GAAINQYPNM SWGFKGNAAG SSSHQMAPQL GLAPTSVPIN SQFSGELESS 360 QQSRQHMKLQ HSRDYDDSNQ QIHWSL

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence

MELGSDYLAE SGGGSGSGSG LSSAEPSLNG LKFGKKIYFE DVGTAGAPFP GSGSSSGSGS  60
GSGSGSGRKV RGGGGGMVTS GQQPPRCQVE GCKVDLSDAK AYYSRHKVCG MHSKSPVVTV  120
AGLEQRFCQQ CSRFHQLPEF DQGKRSCRRR LAGHNERRRK PTSGPFLGTR YGRLSSSVIE  180
NSSQGGGFLI DFSAYQMVGG RDGWPVTSVS KQVSGNQTTV TARHLPQPLW QNHSQDPPPD  240
RYLQCSTAGT GFSGPGIPCG GCFTGVADSN CALSLLSNQP WGSKNQTPGH GVGDLMHAHT  300
KSVTQPVSPR GAAINQYPNM SWGFKGNAAG SSSHQMAPQL GLAPTSVPIN SQFSGELESS  360
QQSRQHMKLQ HSRDYDDSNQ QIHWSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42200.1	6e-66	SBP family protein