PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr05870.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

WRKY

Protein Properties

Length: 308aa MW: 34820.9 Da PI: 6.1175

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr05870.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	60.8	2.5e-19	130	187	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SS.STTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversae.dpkvveitYegeHnhe 59 Dgy+W+KYGqK++k+s f r YY+C C+++k v+++++ +p + +tY +H+++ Dr05870.1 130 DGYQWKKYGQKKIKNSMFQRTYYKCIDGACKATKTVQQKDHcEPPNFMVTYGMQHTCN 187 9*********************************987654999*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence
MDKVSASLSS PSSSTSSSSS SSSHQELITS AAMKELSKGL KLLAQLQTLL LPYLPESNQL 60 NLANNLFQDT FNSLSLSLSI LQSSCHHLPP EHMNKFHQDR CDLNYNLSGH HYKRKRKDAI 120 TTVTSKPFFD GYQWKKYGQK KIKNSMFQRT YYKCIDGACK ATKTVQQKDH CEPPNFMVTY 180 GMQHTCNVAE INQLEFIMDS STPTHTLVPI IESNSFMMNK QQEQTSSSTS DQFQCYNNSS 240 EETTVTAQAL PVDDSAMDQV SSDNIPKIFS PSCDLFYNYE ENESAWMMEE GIRSSHEFNS 300 FVGDGFLF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	113	140	KRKRKDAITTVTSKPFFDGYQWKKYGQK
2	113	143	KRKRKDAITTVTSKPFFDGYQWKKYGQKKIK
3	114	144	KRKRKDAITTVTSKPFFDGYQWKKYGQKKIK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56400.1	1e-15	WRKY family protein

Link Out ? help Back to Top
Ensembl	Dr05870.1