PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr00306.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

WRKY

Protein Properties

Length: 382aa MW: 43229.2 Da PI: 4.9745

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr00306.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	99.1	2.7e-31	116	172	3	60
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 Dgy+WrKYGqK vkgse+prsYY+Ct+++Cp+kkkvers+ ++v+ei+Y+g Hnh+k Dr00306.1 116 DGYKWRKYGQKAVKGSENPRSYYKCTHPNCPTKKKVERSS-AGHVTEIVYSGVHNHPK 172 9*************************************.9************85 PP
2	WRKY	45.7	1.3e-14	247	285	21	59
-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 21 prsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +sYY+Cts gC+v+k+ver+++d k v++tYeg+Hnh+ Dr00306.1 247 RKSYYKCTSDGCSVRKHVERASDDIKSVITTYEGKHNHD 285 469***********************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence
MATSHFWGML AFEDEQEEKE SRTYSFSSSS PLSSLSPYFA NLDHVLMDSP PPLFIQQEIK 60 EDDMYQNIQR DLQSFQQYPM EQASQENQLL KSYQEPEELN DIIEASHADQ QMGAIDGYKW 120 RKYGQKAVKG SENPRSYYKC THPNCPTKKK VERSSAGHVT EIVYSGVHNH PKPSQSTRGF 180 MDSIGNPEAS SASFADDDFD ENEPDAKRWK NEVQNGEVSG NKMVKEPRVV VQTTSSVDLL 240 DDGYRWRKSY YKCTSDGCSV RKHVERASDD IKSVITTYEG KHNHDVPLAR GCGGHSLNNN 300 NNNNNNNNKD MSNINNNINN ISMAFKPSNQ SQQGPSWYES SMAFYMNQQQ QLTTQTGSGS 360 NSNAKEEPIE EDALISYVPF IG

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence

MATSHFWGML AFEDEQEEKE SRTYSFSSSS PLSSLSPYFA NLDHVLMDSP PPLFIQQEIK  60
EDDMYQNIQR DLQSFQQYPM EQASQENQLL KSYQEPEELN DIIEASHADQ QMGAIDGYKW  120
RKYGQKAVKG SENPRSYYKC THPNCPTKKK VERSSAGHVT EIVYSGVHNH PKPSQSTRGF  180
MDSIGNPEAS SASFADDDFD ENEPDAKRWK NEVQNGEVSG NKMVKEPRVV VQTTSSVDLL  240
DDGYRWRKSY YKCTSDGCSV RKHVERASDD IKSVITTYEG KHNHDVPLAR GCGGHSLNNN  300
NNNNNNNNKD MSNINNNINN ISMAFKPSNQ SQQGPSWYES SMAFYMNQQQ QLTTQTGSGS  360
NSNAKEEPIE EDALISYVPF IG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38470.1	3e-69	WRKY family protein

Link Out ? help Back to Top
Ensembl	Dr00306.1