PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cz14g01180.t1

Organism

Chromochloris zofingiensis

Taxonomic ID

31302

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Chromochloridaceae; Chromochloris

Family

C3H

Protein Properties

Length: 799aa MW: 87009.8 Da PI: 5.5947

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cz14g01180.t1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23	1.4e-07	760	781	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+f++r G C++G+ C ++Hg Cz14g01180.t1 760 VPCKFWLR-GACQRGNACWYMHG 781 69****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 799 aa Download sequence
MVSDKQEALR IPGLDPGASD DEVRVAYKRL VVKWHPDKNQ NSQESNQMMQ RINAAKDKLS 60 QSYEDDDDDD DEDYDYDDDD YDDVYDPFAD EMDFGAFLRI NQELLSSRNA FSDICYCPAC 120 QAERASRRRA RQRSDEQYAE ARRQEHEARR GAEQKLKEQQ EKDKRLQEID PMNSAAYKQG 180 GDSRDAVIRD HFLKQTPTVT CYKTSDTALT LVLDVPDLSL LLDGEIPPKG VDWEVSYQKQ 240 SDKKWNSKAA YRQSDNACSI NSHQPRILLN TSVHGTGTEY LIRVRTGVSG SLTWSGTPEW 300 GAWSPIKTFT TTGNPPNTGN GKHTQGKKGG RKKNRDGVFA SVNLDGVQEH DGPDAPPDND 360 DVVTPENDDD TTPEMLVQDN PNNAAGSAQQ HDTGSTNDHK HHNHDAGGSD GESDTQEDAA 420 SSSNVADDMQ ARGSSGRHQE SHSNLLATPK TSAPPLEPLY QKPVEGFRPL FLDSVSSSYA 480 ALYQQNKILH SKEQLAAVIA ALLESSDDDE DTGGVRYATG LQPDGHHLLR QQQQQQQHAA 540 GHTGRQTSTT SSTSSAPSNT NTAVDAHVLV PPVIQSSSKP LMRPLGGPSR GAHSGRSAAQ 600 HDAAVPQVGT VPPVLPTAAA TASCKGTMEQ AVAAVAAAVA SVQHHSRQQQ PQQHTNSDAL 660 HQPLDGAGLH QDKQQDAPGH RQALTQRAPV VQRDARVVAS GNDGDDVGVA ADDDHYKPAQ 720 SGSHEGLTWQ QRQLQQQQAT QSTASQQTSP ASRHVPSVLV PCKFWLRGAC QRGNACWYMH 780 GDPTPWPAAT AKPRCCCC*

Sequence ? help Back to Top

Protein Sequence Length: 799 aa Download sequence

MVSDKQEALR IPGLDPGASD DEVRVAYKRL VVKWHPDKNQ NSQESNQMMQ RINAAKDKLS  60
QSYEDDDDDD DEDYDYDDDD YDDVYDPFAD EMDFGAFLRI NQELLSSRNA FSDICYCPAC  120
QAERASRRRA RQRSDEQYAE ARRQEHEARR GAEQKLKEQQ EKDKRLQEID PMNSAAYKQG  180
GDSRDAVIRD HFLKQTPTVT CYKTSDTALT LVLDVPDLSL LLDGEIPPKG VDWEVSYQKQ  240
SDKKWNSKAA YRQSDNACSI NSHQPRILLN TSVHGTGTEY LIRVRTGVSG SLTWSGTPEW  300
GAWSPIKTFT TTGNPPNTGN GKHTQGKKGG RKKNRDGVFA SVNLDGVQEH DGPDAPPDND  360
DVVTPENDDD TTPEMLVQDN PNNAAGSAQQ HDTGSTNDHK HHNHDAGGSD GESDTQEDAA  420
SSSNVADDMQ ARGSSGRHQE SHSNLLATPK TSAPPLEPLY QKPVEGFRPL FLDSVSSSYA  480
ALYQQNKILH SKEQLAAVIA ALLESSDDDE DTGGVRYATG LQPDGHHLLR QQQQQQQHAA  540
GHTGRQTSTT SSTSSAPSNT NTAVDAHVLV PPVIQSSSKP LMRPLGGPSR GAHSGRSAAQ  600
HDAAVPQVGT VPPVLPTAAA TASCKGTMEQ AVAAVAAAVA SVQHHSRQQQ PQQHTNSDAL  660
HQPLDGAGLH QDKQQDAPGH RQALTQRAPV VQRDARVVAS GNDGDDVGVA ADDDHYKPAQ  720
SGSHEGLTWQ QRQLQQQQAT QSTASQQTSP ASRHVPSVLV PCKFWLRGAC QRGNACWYMH  780
GDPTPWPAAT AKPRCCCC*