PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cz13g01280.t1

Organism

Chromochloris zofingiensis

Taxonomic ID

31302

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Chromochloridaceae; Chromochloris

Family

C3H

Protein Properties

Length: 809aa MW: 87068.3 Da PI: 7.4257

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cz13g01280.t1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.7	4.8e-09	79	102	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k+elC+ a G+C+yGdrCkF+H+ Cz13g01280.t1 79 KQELCNAVAI-GICQYGDRCKFSHD 102 78999999.***********6 PP

Sequence ? help Back to Top
Protein Sequence Length: 809 aa Download sequence
METSTPEQLI QRGIAPVKKA YLRPYAPRKH VEAVTGTTDA AEASNTASAA VGNGDAHAAT 60 AVKKKSRRQA QKERAQLVKQ ELCNAVAIGI CQYGDRCKFS HDIVAYLAQK PQDLPGSCPY 120 TATAKCPYGV TCRWACSHVD STGDIARQAV AKRAVAEPVL AVAAQTPAAA ASNGVSSGDP 180 ANDTCQKAAT PSNYSMESCS RLGFPLELPL AKEIVSPVNT LSKELQQQLW KDRYDFSRAD 240 GVLAEIGVSR RGGGGKRLPA KGGLNGAGNN HRNQQQQQQQ QQRRQQLDSS AVPTANGDAA 300 TTNLPAAPAL HNYQQLLQQQ EQQPQQPTDD LDALYDSAAT ATDAHEPHAK RARCESSSCN 360 PAAAATNSMD ATMTPLPAAA AALPAVACNG LQAQPNSALA AGSSATAAAT ATADAAASSY 420 VDTPLRACER PRLDLRGKSY LAPLTTVGNL PFRRLCKGLG ADVTCGEMAL ATNLLQGQVS 480 EWALLKRHPC EDMFGVQVCG GYPDAMARLA QLIDEHVDCS FVDINCGCPI DIICNRGAGS 540 ALLQKPKRMQ EIVTSMSSLL SVPLTVKLRK GYYDNAEVAH TIIPQLKEWG AAAVTLHGRS 600 RQQRYSRLAD WDYIGRCATV ANGLPLIGNG DVFSYQDWQQ HLISGQLSTV MVARAALIKP 660 WVFTEIKEAR LWDISSGERL DMMKQFVSYG LEHWGSDRRG VENTRRFLLE WLSFSHRYVP 720 VGLLEVVPQQ MHWRPPSYFG RNDLETLLGS DNAADWVKIS EMLLGPTPPG FAFAPKHKSN 780 AYTASNNEMD MALGEMGVVA TNEDEENG*

Sequence ? help Back to Top

Protein Sequence Length: 809 aa Download sequence

METSTPEQLI QRGIAPVKKA YLRPYAPRKH VEAVTGTTDA AEASNTASAA VGNGDAHAAT  60
AVKKKSRRQA QKERAQLVKQ ELCNAVAIGI CQYGDRCKFS HDIVAYLAQK PQDLPGSCPY  120
TATAKCPYGV TCRWACSHVD STGDIARQAV AKRAVAEPVL AVAAQTPAAA ASNGVSSGDP  180
ANDTCQKAAT PSNYSMESCS RLGFPLELPL AKEIVSPVNT LSKELQQQLW KDRYDFSRAD  240
GVLAEIGVSR RGGGGKRLPA KGGLNGAGNN HRNQQQQQQQ QQRRQQLDSS AVPTANGDAA  300
TTNLPAAPAL HNYQQLLQQQ EQQPQQPTDD LDALYDSAAT ATDAHEPHAK RARCESSSCN  360
PAAAATNSMD ATMTPLPAAA AALPAVACNG LQAQPNSALA AGSSATAAAT ATADAAASSY  420
VDTPLRACER PRLDLRGKSY LAPLTTVGNL PFRRLCKGLG ADVTCGEMAL ATNLLQGQVS  480
EWALLKRHPC EDMFGVQVCG GYPDAMARLA QLIDEHVDCS FVDINCGCPI DIICNRGAGS  540
ALLQKPKRMQ EIVTSMSSLL SVPLTVKLRK GYYDNAEVAH TIIPQLKEWG AAAVTLHGRS  600
RQQRYSRLAD WDYIGRCATV ANGLPLIGNG DVFSYQDWQQ HLISGQLSTV MVARAALIKP  660
WVFTEIKEAR LWDISSGERL DMMKQFVSYG LEHWGSDRRG VENTRRFLLE WLSFSHRYVP  720
VGLLEVVPQQ MHWRPPSYFG RNDLETLLGS DNAADWVKIS EMLLGPTPPG FAFAPKHKSN  780
AYTASNNEMD MALGEMGVVA TNEDEENG*