PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cz10g15210.t1
Organism
Chromochloris zofingiensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Chromochloridaceae; Chromochloris
Family C3H
Protein Properties Length: 317aa    MW: 35495.2 Da    PI: 6.0878
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cz10g15210.t1genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH391.4e-12166191126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    y   +C+++ +tG+C+yGd+CkF H+
  Cz10g15210.t1 166 YQPDICKDYKETGFCSYGDSCKFLHD 191
                    67789********************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    
MADTEDPAVS AAASGGFKQR KNRANIRKRA TDEGDVAVAD DTSVVRKAKQ TKTDPLSFST  60
KKDAKDELTV KYDSSTALPT GRDDSAFKYL ETETEFDKDA RAQRERVLKQ ATGETATDNQ  120
YRGMNSYVDY RAGFRREHTI GAEKGTGSHG PLRGNMFVRT TARFDYQPDI CKDYKETGFC  180
SYGDSCKFLH DRGDYKSGWE LERDWDAEQK QKQQALAKGV MVDNDNDAED EQQHQEEEDD  240
GLPFACFICR KLWTECSSDP VVTRCKHYFC ESCALKQNRK TGKCAACDQP TQGIFNIATD  300
ITKKLKYTKD KGDAGG*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.18e-90C3H family protein