PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cz09g22110.t1

Organism

Chromochloris zofingiensis

Taxonomic ID

31302

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Chromochloridaceae; Chromochloris

Family

C3H

Protein Properties

Length: 529aa MW: 57298.4 Da PI: 8.0112

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cz09g22110.t1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.9	1.3e-06	59	84	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk ++C++ ++ C++Gd+C++aH Cz09g22110.t1 59 YKSAPCPDSKKGSVCPRGDTCPYAHN 84 8999999999988************6 PP

Sequence ? help Back to Top
Protein Sequence Length: 529 aa Download sequence
MAESEDAVMP KNVFNSLEFY LYCYKVLPCA KRYAHDWATC PFAHKNEKAR RRDPRRQFYK 60 SAPCPDSKKG SVCPRGDTCP YAHNVYEYWL HPSRFRTQMC QQGGSCSRPL CFFAHSLEQL 120 RFPDSQFPDD PNGLGAAVPI STASTIMPPA HQVQPPSQLT YQEQLAGLGA THHQPPPTKQ 180 QQQQQQRLQS LFADTASALY QQQLGLNAVQ QQSFQQHQRQ QQLQMMQPQG LPPTATQPNY 240 DGLSFNGGRS SLSDQISLMT ALLGGGANSN LLSTPRNGLN HSLTGPVQHH QQQQMHSGRA 300 SLPEDCKPES QQQGVLANWQ HAVSMANFGG VSSPQPTSPA NNMQAAPGIT VPGVLSGPAM 360 TSPASYSPTS TVSSLWEACS LQAAGVHALL PDMLLAQNQQ SAVSSALSPT SRQVPGPAAH 420 VHPHANTGQG TCHAAVCKPD INLHMQMQQM HINSRCSLDI PADAHHLALG RSAMTARHPA 480 GLSHAAVISR SRISPDSLAP DTDPEIQLRP PTTVELERLV LSMAASQT*

Sequence ? help Back to Top

Protein Sequence Length: 529 aa Download sequence

MAESEDAVMP KNVFNSLEFY LYCYKVLPCA KRYAHDWATC PFAHKNEKAR RRDPRRQFYK  60
SAPCPDSKKG SVCPRGDTCP YAHNVYEYWL HPSRFRTQMC QQGGSCSRPL CFFAHSLEQL  120
RFPDSQFPDD PNGLGAAVPI STASTIMPPA HQVQPPSQLT YQEQLAGLGA THHQPPPTKQ  180
QQQQQQRLQS LFADTASALY QQQLGLNAVQ QQSFQQHQRQ QQLQMMQPQG LPPTATQPNY  240
DGLSFNGGRS SLSDQISLMT ALLGGGANSN LLSTPRNGLN HSLTGPVQHH QQQQMHSGRA  300
SLPEDCKPES QQQGVLANWQ HAVSMANFGG VSSPQPTSPA NNMQAAPGIT VPGVLSGPAM  360
TSPASYSPTS TVSSLWEACS LQAAGVHALL PDMLLAQNQQ SAVSSALSPT SRQVPGPAAH  420
VHPHANTGQG TCHAAVCKPD INLHMQMQQM HINSRCSLDI PADAHHLALG RSAMTARHPA  480
GLSHAAVISR SRISPDSLAP DTDPEIQLRP PTTVELERLV LSMAASQT*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29190.1	2e-40	C3H family protein