PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cz05g08230.t1

Organism

Chromochloris zofingiensis

Taxonomic ID

31302

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Chromochloridaceae; Chromochloris

Family

C3H

Protein Properties

Length: 994aa MW: 108969 Da PI: 6.2407

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cz05g08230.t1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17	1.1e-05	204	229	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++ ++C ++++ G+C++ +C+++H+ Cz05g08230.t1 204 PGKPPCAYYMKHGWCQFKMKCRYSHP 229 5789*********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 994 aa Download sequence
MTKLSKDQLL DAVDRLWQSS DNKEDAAKRI LARKLIEETH KPGGKRALTM ADAGQPIREY 60 LGESWSHTQQ RENKPRLKEL LENDPYFHIK DNPDGQTTVT VNINRIVETA GTLDDKHSSR 120 DSSAPQPQAD LPIREGAQDC RFYLRNGWCM FQHKCWYNHP PLHSLKKGKG KGKAQTAGDN 180 NEHGWNGEYS ASGMSVSDIY AANPGKPPCA YYMKHGWCQF KMKCRYSHPV LSAEQQALVQ 240 KALATEAAAM AAAAAGTVPG SSHSSQSDVA VAVGPHGLPL RPGAKNCRFY VKHGWCGIGL 300 QCWFNHPVKG ELPAVANPAA AVSLDEEPRT EPAVAVAAAP AGSHEEGQYE PIVMQPHPFV 360 LLDLIADSLW PPLKNKDMFL KGALAKHVVR ECYSPSDADD PDKVYTLLMS KAGVYLRKLW 420 LEQPYYDATQ KPYSNFSDVL EGDPYLDTAS TAAGTSGKTA PCVHLHFSDM LQGGVTPAVD 480 LLTSMAESFW PPSASKESYM RGLLARMIIR GILDPQSVVQ MVVMSDQEPT SFRVPLSTAG 540 QVLQLRGTAD HPCDNSMRPS VTELLQQDSY LYIEDSPADE NSKHVTLDVS EIIAQWPAQL 600 RKRAMQAHAE QGHNAASDIT AGPSSSNITV TRIDSNSTES DTTADSDSDE GMDANNTLQS 660 TQTAGQASTS GIADNGHGFS GSSGNDETVD EPEEPPVITW WPEHEPERPD YTWAEMAVQM 720 VESDSPVVTE MVQHLELCDL ISMGCATYRS LPHLLQFFAP YAGVAGLQFP ATVYLLDTTH 780 HEGVQEVMGL IKPILESNQI VKVCHSSKQW NGLLRKFFGV DLRCYFDTQQ AWHLMHQLKC 840 QLGKGNPTAL KNSEEASLAL LLQKFHLYHP ARQQCHANVV RLWQVRPLSP DLIECAAADV 900 AFLIPLLEMV APLLKSTALA AETMFSKMPS RAVAQLTQHS PHLATLLSAL GEVADGVDTA 960 AGGLSVRRLM EWAKLDVFHQ KSLHNGAGLH KKH*

Sequence ? help Back to Top

Protein Sequence Length: 994 aa Download sequence

MTKLSKDQLL DAVDRLWQSS DNKEDAAKRI LARKLIEETH KPGGKRALTM ADAGQPIREY  60
LGESWSHTQQ RENKPRLKEL LENDPYFHIK DNPDGQTTVT VNINRIVETA GTLDDKHSSR  120
DSSAPQPQAD LPIREGAQDC RFYLRNGWCM FQHKCWYNHP PLHSLKKGKG KGKAQTAGDN  180
NEHGWNGEYS ASGMSVSDIY AANPGKPPCA YYMKHGWCQF KMKCRYSHPV LSAEQQALVQ  240
KALATEAAAM AAAAAGTVPG SSHSSQSDVA VAVGPHGLPL RPGAKNCRFY VKHGWCGIGL  300
QCWFNHPVKG ELPAVANPAA AVSLDEEPRT EPAVAVAAAP AGSHEEGQYE PIVMQPHPFV  360
LLDLIADSLW PPLKNKDMFL KGALAKHVVR ECYSPSDADD PDKVYTLLMS KAGVYLRKLW  420
LEQPYYDATQ KPYSNFSDVL EGDPYLDTAS TAAGTSGKTA PCVHLHFSDM LQGGVTPAVD  480
LLTSMAESFW PPSASKESYM RGLLARMIIR GILDPQSVVQ MVVMSDQEPT SFRVPLSTAG  540
QVLQLRGTAD HPCDNSMRPS VTELLQQDSY LYIEDSPADE NSKHVTLDVS EIIAQWPAQL  600
RKRAMQAHAE QGHNAASDIT AGPSSSNITV TRIDSNSTES DTTADSDSDE GMDANNTLQS  660
TQTAGQASTS GIADNGHGFS GSSGNDETVD EPEEPPVITW WPEHEPERPD YTWAEMAVQM  720
VESDSPVVTE MVQHLELCDL ISMGCATYRS LPHLLQFFAP YAGVAGLQFP ATVYLLDTTH  780
HEGVQEVMGL IKPILESNQI VKVCHSSKQW NGLLRKFFGV DLRCYFDTQQ AWHLMHQLKC  840
QLGKGNPTAL KNSEEASLAL LLQKFHLYHP ARQQCHANVV RLWQVRPLSP DLIECAAADV  900
AFLIPLLEMV APLLKSTALA AETMFSKMPS RAVAQLTQHS PHLATLLSAL GEVADGVDTA  960
AGGLSVRRLM EWAKLDVFHQ KSLHNGAGLH KKH*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	7e-17	C3H family protein