PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cz04g32140.t1

Organism

Chromochloris zofingiensis

Taxonomic ID

31302

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Chromochloridaceae; Chromochloris

Family

C3H

Protein Properties

Length: 386aa MW: 43107.1 Da PI: 6.4921

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cz04g32140.t1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.1	2.6e-07	6	26	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 lC++++ G C +Gd+CkF+H+ Cz04g32140.t1 6 LCKYYMN-GCCAFGDSCKFSHD 26 99999.***********8 PP
2	zf-CCCH	24.5	4.9e-08	34	54	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+++++ G C yGd+C++ H+ Cz04g32140.t1 34 VCKYYLA-GGCAYGDKCRYDHV 54 6****.***********7 PP
3	zf-CCCH	18.8	2.8e-06	159	181	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +lC+ +a +G C++Gd+C+ +Hg Cz04g32140.t1 159 PLCSEYAGFGSCHRGDNCHLIHG 181 79*****************8887 PP

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence
MTSNTLCKYY MNGCCAFGDS CKFSHDKTDM PNQVCKYYLA GGCAYGDKCR YDHVKPSWSQ 60 SNEHSSSSYK PPVLKPAVQH DPTTQLVPTP SQTKTLVHWP SGVDEFGLVE CQDEDNTAET 120 SQPWHVECEN AEGGADGYEQ HQHEDDLPPT EVADPADLPL CSEYAGFGSC HRGDNCHLIH 180 GDLCELCHKH AIHPYNPDTA QQHRQQCQEA QHKRRVRERD KQIECAICLE RVLEQSEPSH 240 RRFGLMTCDH AFCLHCIRSW RATGEVDVDT ALRTCPICRV TSHFVTPSTR WPESPGDKQA 300 IIDAYKAQLA STDCMHFDFG AGKCPFGTSC FYRHAFKDGT LETGPNLRKA GNAEGDICVI 360 APVSLASFLD TPQARRLLQG GRRRR*

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence

MTSNTLCKYY MNGCCAFGDS CKFSHDKTDM PNQVCKYYLA GGCAYGDKCR YDHVKPSWSQ  60
SNEHSSSSYK PPVLKPAVQH DPTTQLVPTP SQTKTLVHWP SGVDEFGLVE CQDEDNTAET  120
SQPWHVECEN AEGGADGYEQ HQHEDDLPPT EVADPADLPL CSEYAGFGSC HRGDNCHLIH  180
GDLCELCHKH AIHPYNPDTA QQHRQQCQEA QHKRRVRERD KQIECAICLE RVLEQSEPSH  240
RRFGLMTCDH AFCLHCIRSW RATGEVDVDT ALRTCPICRV TSHFVTPSTR WPESPGDKQA  300
IIDAYKAQLA STDCMHFDFG AGKCPFGTSC FYRHAFKDGT LETGPNLRKA GNAEGDICVI  360
APVSLASFLD TPQARRLLQG GRRRR*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	3e-80	C3H family protein