PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc177160.1_g010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | ARF | ||||||||
Protein Properties | Length: 207aa MW: 23532.1 Da PI: 8.3598 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.1 | 8.6e-15 | 37 | 97 | 34 | 99 |
SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 34 ktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +t+ +d g+ W++++i+r++ ++l +GW++Fv++++L +gD++vF +++++e +v+++r+ Cse_sc177160.1_g010.1 37 QTMEAKDIYGEIWKFRHIFRRT---HLLMTGWSSFVNQKKLVAGDSIVFL--RTENGEICVGIRRA 97 378889***********88777...58888********************..559999*****997 PP | |||||||
2 | Auxin_resp | 26.6 | 2.5e-10 | 176 | 205 | 37 | 65 |
Auxin_resp 37 vkvsvGmRfkmafetedsserrl.sGtvvg 65 ++ ++ mRfkmafe edss++++ +Gtv++ Cse_sc177160.1_g010.1 176 IHSCARMRFKMAFEIEDSSRISWfMGTVAS 205 567899**********************87 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence |
MSRKAKDYAA YSSHEPCCEM GMTIFPHLDY AVDSPVQTME AKDIYGEIWK FRHIFRRTHL 60 LMTGWSSFVN QKKLVAGDSI VFLRTENGEI CVGIRRAKIG GVNGPEFLPG LNSYPKNTVS 120 FYGAFPSYLR ENENKLMRSG SNRNMNIDYG GRGKVRPEDV IEATSLILEC LLPMCIHSCA 180 RMRFKMAFEI EDSSRISWFM GTVASNE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 3e-57 | ARF family protein |