PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cse_sc163817.1_g010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 241aa MW: 27717.6 Da PI: 8.4757 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 71.7 | 1.7e-22 | 53 | 146 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtklele 84 +fY++YAk++GFsvr+++++ + + +t+r+f C + g+++ + +++++ +r+r+++r+gC+a +++ +++ +w+++ ++++ Cse_sc163817.1_g010.1 53 EFYCSYAKQCGFSVRRNRTRGKdGVGKGVTRRDFICHRGGYPHFKPSEDVNVQRNRKSSRCGCQAYMRIVRRSdfnVPEWRIIGFSND 140 6****************99987456677********************9*******************99998776789********* PP FAR1 85 HnHela 90 HnHel+ Cse_sc163817.1_g010.1 141 HNHELS 146 ****97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 241 aa Download sequence |
MMEETSENST DLSADDIGTI EEIPENSILS RQGSVNLVPF IGQRFVSQEA AYEFYCSYAK 60 QCGFSVRRNR TRGKDGVGKG VTRRDFICHR GGYPHFKPSE DVNVQRNRKS SRCGCQAYMR 120 IVRRSDFNVP EWRIIGFSND HNHELSKSMD VQMPLPAYCA MSADDKSRIC MFAKAGMSVR 180 QMLRLMELEK GVKLGCLLFT EIDVRNLLQS FRTVDRDNDA IDLLKMCKDK KDKDPKFQYN 240 F |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G10240.1 | 2e-76 | FAR1 family protein |