PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc104981.1_g010.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family FAR1
Protein Properties Length: 279aa    MW: 31717.1 Da    PI: 9.2818
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc104981.1_g010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR159.88.7e-1989169290
                   FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                             Y++YA e+GF vr+ ++++    g +++++f Cskeg+++ ++ k     r r+e rt+Cka++ v ++ ++k++v+++ +eHnH +
  Cse_sc104981.1_g010.1  89 AYKDYAAEAGFIVRRGHQTND--GGIVMNKEFLCSKEGTKKVKSVK-----RIRSEFRTNCKARIYVVRS-SEKYRVKHFAEEHNHGF 168
                            5***************98877..999*************9998777.....9999************999.9**************98 PP

                   FAR1  90 a 90 
                            +
  Cse_sc104981.1_g010.1 169 F 169
                            6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    
MDEDSKDEKY RTTSITIFGS SDSMRQNCAS NEFVEDENLS ADVNVEENQE VNSPDFFTST  60
SILIKPVVVK TLVPVEGTFF DSVEDAYKAY KDYAAEAGFI VRRGHQTNDG GIVMNKEFLC  120
SKEGTKKVKS VKRIRSEFRT NCKARIYVVR SSEKYRVKHF AEEHNHGFFT AEDRHLQKSH  180
RSMSLAHQSL GQIAKLEFML SDLVKSIGLN ILLKSTIMRE TREREGVLAR GLQKYGNIRL  240
KAPPLPWMGG LHEKRPPIGL WIRDTVGKDP SFLHGVALR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-08FAR1 family protein