PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc068653.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 818aa MW: 92206.3 Da PI: 7.8542

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc068653.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	44.9	3.7e-14	103	231	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.......................................te 49 +fY++Y+k+ GF+++ ++++ + ++ + f+C++ k++++ + + Cse_sc068653.1_g010.1 103 NFYRHYSKMGGFDIKLGTESNPDGSDCPSIKYFRCNRGVKKRDSMYDrhrsysdvavrgrvngkgvdgaidnkgkgidlslvgdyfVK 190 6*****************9999999999****99999988899********************************999 PP FAR1 50 kerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 k+ r++++ +tgC a+l+v+k + +ev+ +++eHnH+l+ Cse_sc068653.1_g010.1 191 KNFRKNTSCKTGCLAQLRVRKVDGVMYEVYVFVEEHNHPLV 231 9999*********************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 818 aa Download sequence
LGTISSSNNV GESSNCSYVC GGSSSLGSDG VRVSSSGSVS DDSSSKLVSA SSSSSVVNVS 60 NVGDRSTGVS SVIDGSRVWV PDVDVSLKPT KGTVFVSLVQ AYNFYRHYSK MGGFDIKLGT 120 ESNPDGSDCP SIKYFRCNRG VKKRDSMYDR HRSYSDVAVR GRVNGKGVDG AIDNKGKGID 180 LSLVGDYFVK KNFRKNTSCK TGCLAQLRVR KVDGVMYEVY VFVEEHNHPL VSKEDMQFLM 240 SSRDMGCSKQ HFLMQVSNSN VGPVRAFKLM KEIYGGFENI GATVVDCKNF KRDVSTFIGD 300 HDTQMVVEKL ENLEKHCEGF FVDYYKGEGD SLSALFWADS CAKMNYRHFG DVISFDATFR 360 SNKYIMVFVP FTGIDNHNRS VTFGAGLLAD ETIASYKWLL RAFKKAFLTD PQVVVTDQDP 420 LMKQAIADVF PNARHRLCMW HIMQKLSVKV GSSVSNNTDF RKRLCAVVWN DQISPSIFEE 480 EWKSIIDEFG LFENKWLSDI YDMRSRWIPA FLRDEDLSGL MRTTSRSESE NHFFGRWTNA 540 NLTLVEFISH FDSAMDSQRY SQRKNDHESR YKKPDMRTGL KLEKDAAEIY TLNVYKKPDM 600 RTGLKLEKDA AEIYTLNVFF DIQEEISASV TNFLSVSTQE IGLFEKYFIR DTGVKKMTRH 660 RLKFLSLNGV EDFPREYVLD RWCKTPDDVC LDVFVNAADS SSDVVIRSIR RIVEDTVDRL 720 MPCREKLDVY RLELSELLSR AESDVLVGLK KSKSDTFCSM LGVSEPEGVV IKVPKQSKNK 780 GTGAEGHNSR TCPYKDTIRA GNKRACRSTG AMDVNYEE

Sequence ? help Back to Top

Protein Sequence Length: 818 aa Download sequence

LGTISSSNNV GESSNCSYVC GGSSSLGSDG VRVSSSGSVS DDSSSKLVSA SSSSSVVNVS  60
NVGDRSTGVS SVIDGSRVWV PDVDVSLKPT KGTVFVSLVQ AYNFYRHYSK MGGFDIKLGT  120
ESNPDGSDCP SIKYFRCNRG VKKRDSMYDR HRSYSDVAVR GRVNGKGVDG AIDNKGKGID  180
LSLVGDYFVK KNFRKNTSCK TGCLAQLRVR KVDGVMYEVY VFVEEHNHPL VSKEDMQFLM  240
SSRDMGCSKQ HFLMQVSNSN VGPVRAFKLM KEIYGGFENI GATVVDCKNF KRDVSTFIGD  300
HDTQMVVEKL ENLEKHCEGF FVDYYKGEGD SLSALFWADS CAKMNYRHFG DVISFDATFR  360
SNKYIMVFVP FTGIDNHNRS VTFGAGLLAD ETIASYKWLL RAFKKAFLTD PQVVVTDQDP  420
LMKQAIADVF PNARHRLCMW HIMQKLSVKV GSSVSNNTDF RKRLCAVVWN DQISPSIFEE  480
EWKSIIDEFG LFENKWLSDI YDMRSRWIPA FLRDEDLSGL MRTTSRSESE NHFFGRWTNA  540
NLTLVEFISH FDSAMDSQRY SQRKNDHESR YKKPDMRTGL KLEKDAAEIY TLNVYKKPDM  600
RTGLKLEKDA AEIYTLNVFF DIQEEISASV TNFLSVSTQE IGLFEKYFIR DTGVKKMTRH  660
RLKFLSLNGV EDFPREYVLD RWCKTPDDVC LDVFVNAADS SSDVVIRSIR RIVEDTVDRL  720
MPCREKLDVY RLELSELLSR AESDVLVGLK KSKSDTFCSM LGVSEPEGVV IKVPKQSKNK  780
GTGAEGHNSR TCPYKDTIRA GNKRACRSTG AMDVNYEE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-75	FAR1 family protein