PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc063826.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

bHLH

Protein Properties

Length: 509aa MW: 57071.6 Da PI: 9.3061

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc063826.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	45.3	1.6e-14	332	376	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h ++Er+RR+++N++f++Lr+l+P+ K +Ka++L ++eYI+sL Cse_sc063826.1_g020.1 332 HVIAERKRREKLNESFQTLRSLIPPG-----SKKDKASVLSNTMEYISSL 376 889*******************95.....599************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 509 aa Download sequence
MDSIFNLEET KRSRLLRQIM DSFGFTYICL WSHFSQPSNC LISIDGVYRK GNNQASTSSG 60 SLSVRGIPGF AFMHNITYME RNELELLNLA SNFAQLQFYQ EAGIKTAIFM GSENGEIELG 120 MTNNSSKIKN FEIGLKKLFS GDFPQGVLPQ RLEQAWASSS SSSLRSLSMD NNVENSPFLF 180 NMLHSTPYMS EMFALTEPHM DQQAPNQKPQ STTILRSEDP LRQAIEQIRT SQLIPSREHE 240 EAAMTRAILA VITSTSSPTP SSSFPYQRQP PRVASAFKRH GSSNLGPIKQ RVPNRQNLHR 300 RSLSFFRNLS GARAQRDQVV QINGPTSNQF LHVIAERKRR EKLNESFQTL RSLIPPGSKK 360 DKASVLSNTM EYISSLKSQV EELNKRNQIL ETGQRVGKEP PNQGSSRFSR EGLVVGITDI 420 GESTSEAQAI DLEVNARGNV ILVDLVMSVL EFIKQIENVS VMSIDAGTRM LETEAIANRV 480 ILRLRIQGNE CDISSFEEAV RRISFHVGV

Sequence ? help Back to Top

Protein Sequence Length: 509 aa Download sequence

MDSIFNLEET KRSRLLRQIM DSFGFTYICL WSHFSQPSNC LISIDGVYRK GNNQASTSSG  60
SLSVRGIPGF AFMHNITYME RNELELLNLA SNFAQLQFYQ EAGIKTAIFM GSENGEIELG  120
MTNNSSKIKN FEIGLKKLFS GDFPQGVLPQ RLEQAWASSS SSSLRSLSMD NNVENSPFLF  180
NMLHSTPYMS EMFALTEPHM DQQAPNQKPQ STTILRSEDP LRQAIEQIRT SQLIPSREHE  240
EAAMTRAILA VITSTSSPTP SSSFPYQRQP PRVASAFKRH GSSNLGPIKQ RVPNRQNLHR  300
RSLSFFRNLS GARAQRDQVV QINGPTSNQF LHVIAERKRR EKLNESFQTL RSLIPPGSKK  360
DKASVLSNTM EYISSLKSQV EELNKRNQIL ETGQRVGKEP PNQGSSRFSR EGLVVGITDI  420
GESTSEAQAI DLEVNARGNV ILVDLVMSVL EFIKQIENVS VMSIDAGTRM LETEAIANRV  480
ILRLRIQGNE CDISSFEEAV RRISFHVGV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	336	341	ERKRRE
2	337	342	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	6e-45	bHLH family protein