PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc062537.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C2H2

Protein Properties

Length: 521aa MW: 55085.3 Da PI: 7.9178

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc062537.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.5e-05	63	85	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Cse_sc062537.1_g010.1 63 FVCEICNKGFQRDQNLQLHRRGH 85 89*******************88 PP
2	zf-C2H2	12.8	0.00035	139	161	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC C+k + +s+ k H++ + Cse_sc062537.1_g010.1 139 WKCDQCSKKYAVQSDWKAHLKIC 161 58******************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 521 aa Download sequence
MTADVDNSLA LVESTVSGEG SGASPAANVE KPVKRKRNLA GMPDPDAEVI ALSPKTLMAT 60 NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LKQRTSTEIR KRVYVCPEPT CVHHDPSRAL 120 GDLTGIKKHF CRKHGEKKWK CDQCSKKYAV QSDWKAHLKI CGTREYKCDC GTLFSRRDSF 180 ITHRAFCDAL AVESAKGQPE DEPPQKKDEE PKPLSVESTP QSTSTASPPP PPAPLAPTPL 240 TVVTPVAPVT PVASSVLCIK NTPELPEVSE LNSDPRPVLD NQPQLVAGLT GSCSGSCSST 300 HTGSTSSSVF ASLFASSTAS KSLQSQPPPQ PQLQPQTTGY QDLMQTLVQP TQTPDLTLPP 360 VAQEPISLCL STSPGSSIFR TAGQDIRQYA PPTQPTMSAT ALLQKAAQMG ASASGASLLR 420 GYGLERDDTD GASIALGLGV GYDGRTGFEQ LIMGTPSVYG PKHTLDFLGL GMAAGGGTTN 480 GLSALMTSIG GSLDVPKAVS SFGLGGRGSS GEFTGKDMGT Q

Sequence ? help Back to Top

Protein Sequence Length: 521 aa Download sequence

MTADVDNSLA LVESTVSGEG SGASPAANVE KPVKRKRNLA GMPDPDAEVI ALSPKTLMAT  60
NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LKQRTSTEIR KRVYVCPEPT CVHHDPSRAL  120
GDLTGIKKHF CRKHGEKKWK CDQCSKKYAV QSDWKAHLKI CGTREYKCDC GTLFSRRDSF  180
ITHRAFCDAL AVESAKGQPE DEPPQKKDEE PKPLSVESTP QSTSTASPPP PPAPLAPTPL  240
TVVTPVAPVT PVASSVLCIK NTPELPEVSE LNSDPRPVLD NQPQLVAGLT GSCSGSCSST  300
HTGSTSSSVF ASLFASSTAS KSLQSQPPPQ PQLQPQTTGY QDLMQTLVQP TQTPDLTLPP  360
VAQEPISLCL STSPGSSIFR TAGQDIRQYA PPTQPTMSAT ALLQKAAQMG ASASGASLLR  420
GYGLERDDTD GASIALGLGV GYDGRTGFEQ LIMGTPSVYG PKHTLDFLGL GMAAGGGTTN  480
GLSALMTSIG GSLDVPKAVS SFGLGGRGSS GEFTGKDMGT Q

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-114	C2H2 family protein