PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc058218.1_g010.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family FAR1
Protein Properties Length: 324aa    MW: 37912.6 Da    PI: 7.2094
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc058218.1_g010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR181.81.2e-2587176290
                   FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                            fYn+YA   GF +r++ ++k+k+++e++++ +vC+k+g++e+++ + +e ++++r+  rtgC+a+l+++k+kd kw+v+ ++  HnHe
  Cse_sc058218.1_g010.1  87 FYNQYAFLHGFGIRIHWKYKNKTTNEVYRKYYVCNKQGFKEQKRGRsSEVSKKRRKDVRTGCEAELRISKKKDRKWCVDIFNDTHNHE 174
                            ***************************************9988766477888999********************************* PP

                   FAR1  89 la 90 
                            l+
  Cse_sc058218.1_g010.1 175 LT 176
                            97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    
MDLENQQIRE PFETHLIEDI DTNDGVYKDN ICEETNDYDV NIRYDDDEVN NDDIWKKPNE  60
DTVNLRCDEN DKIIGKIFDS PDDAYTFYNQ YAFLHGFGIR IHWKYKNKTT NEVYRKYYVC  120
NKQGFKEQKR GRSSEVSKKR RKDVRTGCEA ELRISKKKDR KWCVDIFNDT HNHELTTTPT  180
KVMKHHSHNK FHRSMAYKSL MVELGKSGLR PCQVRKAVNA MKSPNEPTVT SKQCADILAE  240
ERKQYIEAKA DKLYKVGNAS IGINETNCEN GVSALALWYV QSNWTKAIEQ AKDAPSEIKR  300
LNNFLVEFLE DQMIRGKPIE IENC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138142KKRRK
2138161KKRRKDVRTGCEAELRISKKKDRK
3139162KKRRKDVRTGCEAELRISKKKDRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80010.13e-14FAR1 family protein