PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc058213.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 409aa MW: 47512.6 Da PI: 8.0952

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc058213.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	60.9	4e-19	28	122	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.........tekerrtraetrtgCkaklkvkkekdgkwevtk 80 Y++YA e+GF vr+ ++++ g +++++f Cskeg+++ + k+ +++ +r r+e rt+Cka++ v ++ ++k++v++ Cse_sc058213.1_g010.1 28 AYKDYAAEAGFIVRRGHQTND--GGIVMNKEFLCSKEGTKKVKVKEfdslkdncdANSVKRIRSEFRTNCKARIYVVRS-SEKYRVKH 112 5*************98877..999***************9***999999999**********999.9*** PP FAR1 81 leleHnHela 90 + +eHnH ++ Cse_sc058213.1_g010.1 113 FAEEHNHGFF 122 *****986 PP

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence
MLIKPVVVKT LVPVESTLFD SVEEAYKAYK DYAAEAGFIV RRGHQTNDGG IVMNKEFLCS 60 KEGTKKVKVK EFDSLKDNCD ANSVKRIRSE FRTNCKARIY VVRSSEKYRV KHFAEEHNHG 120 FFTAEDRHLQ KSHRSMSLAH QYFAIKALNL NIGPCMSFNF IAELLGGYEN VGATKTDFKN 180 MSRDIYSYIG KYDAQMIIDK FSNLKEIDEN FTFEFKTNTD GQLSCLIWSD DTSKKNYEAF 240 GDVLSFDATY KTNMYNMVFV PFTGVDNHQK CVIFSCGLLS KEDVVSYKWL LQAFLNTHIK 300 EPYLVLTDQD PSMLIAIPDM FKTAKHRLCM WHIMNKLPTK IGSSICEEGG FKKRLCSLVW 360 RESDKPAEFV RKWEALLDEF DLDKHKWLND MFNIKERWIP AYFRDIPMS

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence

MLIKPVVVKT LVPVESTLFD SVEEAYKAYK DYAAEAGFIV RRGHQTNDGG IVMNKEFLCS  60
KEGTKKVKVK EFDSLKDNCD ANSVKRIRSE FRTNCKARIY VVRSSEKYRV KHFAEEHNHG  120
FFTAEDRHLQ KSHRSMSLAH QYFAIKALNL NIGPCMSFNF IAELLGGYEN VGATKTDFKN  180
MSRDIYSYIG KYDAQMIIDK FSNLKEIDEN FTFEFKTNTD GQLSCLIWSD DTSKKNYEAF  240
GDVLSFDATY KTNMYNMVFV PFTGVDNHQK CVIFSCGLLS KEDVVSYKWL LQAFLNTHIK  300
EPYLVLTDQD PSMLIAIPDM FKTAKHRLCM WHIMNKLPTK IGSSICEEGG FKKRLCSLVW  360
RESDKPAEFV RKWEALLDEF DLDKHKWLND MFNIKERWIP AYFRDIPMS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-54	FAR1 family protein