PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc057770.1_g010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family FAR1
Protein Properties Length: 272aa    MW: 31840.7 Da    PI: 9.8892
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc057770.1_g010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR146.41.3e-1437135290
                   FAR1   2 fYneYAkevGFsvrkskskkskrn.geitkrtfvCskegkreeekkk.....tekerr........traetrtgCkaklkvkkekdgk 75 
                             Y++YA+e GF+vrk  ++ +k+n +e  ++ f+C ++g++ ++k       +    +        +++++r +   +  +kk++dgk
  Cse_sc057770.1_g010.1  37 AYKDYAREGGFEVRKGGQRVTKNNkEEPNNKYFYCVRQGFKPQNKPGnqktdK----QqttnplgvNNVTKRRKRASCRXLKKTTDGK 120
                            5**************999988665156788999*******9988776554431....1345577765555555555555789999*** PP

                   FAR1  76 wevtkleleHnHela 90 
                            ++v+k+ ++HnH+l+
  Cse_sc057770.1_g010.1 121 YVVSKFLEKHNHSLV 135
                            ************996 PP

Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    
MVDLPAQNNE ADVQFITMEQ MVWCSQVFDN IELAQKAYKD YAREGGFEVR KGGQRVTKNN  60
KEEPNNKYFY CVRQGFKPQN KPGNQKTDKQ QTTNPLGVNN VTKRRKRASC RXLKKTTDGK  120
YVVSKFLEKH NHSLVYEDDM KYLRASRRLT FSKQQLINQL SNANIGPVRS WKVMKEVYGG  180
FEYIRATDVN CKNYRRGLNE FIGDRDAQMV VDKLLSRAEY FEDYYVEYKQ DKKSKEHVGL  240
LWADEQAKRN YAAFGDVVSF DATFRSNRYH GS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.19e-28FAR1 family protein