PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc054260.1_g020.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family GRAS
Protein Properties Length: 463aa    MW: 52941.2 Da    PI: 5.9176
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc054260.1_g020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS287.92.8e-88804591374
                   GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                            l++lLl  A+ +++++l  a + L++l +++s +gd++qR+aayf+ +L a l+   s   + +  ++++    ++e+ a+  +++vs
  Cse_sc054260.1_g020.1  80 LIHLLLVSATSLDENKLDSAVENLSELYQNVSLSGDSVQRVAAYFADGLVAGLLTRRSPFHDMIMKEPSP----EDEFLAYMELYKVS 163
                            689*************************************************999677776666666665....678888899***** PP

                   GRAS  89 PilkfshltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfA 169
                            P+++f+h+taNq I+ea+e+e     +++H++D+d+++G+QWp+L+q+L++++  ++  slRiTg+g+      e leet+ rL  fA
  Cse_sc054260.1_g020.1 164 PYYQFAHFTANQVIMEAFEREekdnnRALHVVDLDVGYGFQWPSLMQSLSDKAstGNRVSLRITGFGE----TLEGLEETEARLVGFA 247
                            *******************9977777789*********************999766677*********....99************** PP

                   GRAS 170 eel.gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256
                            +++ ++ fef+ ++    ++  l+++r +++E+l+Vnlv+ l +l        s+++e+Lk ++ l+P  vv+veqe  ++  +Fl r
  Cse_sc054260.1_g020.1 248 KTFkNLIFEFKGMLR---SNCGLKSIRKRKKETLVVNLVFYLNSLC-----NISYISETLKWINILNPSAVVLVEQEGGRSPRTFLSR 327
                            **9569******633...455689****************999998.....44456699***************************** PP

                   GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllr. 342
                            f+e l+yy+a+fdsl+  lp +s +r  +E+  lg+ei+ +    ++e    + e++e+W++r+e+ GF+ ++ls+k   qaklll+ 
  Cse_sc054260.1_g020.1 328 FMEFLHYYAAMFDSLDDFLPLDSPQRLQIEKNHLGKEIKRLMDFDNDEaNSPKYERMETWKARMESHGFEGMSLSSKSIIQAKLLLKi 415
                            *******************************************99998677899********************************83 PP

                   GRAS 343 .......kvk.sdg....yrveeesgslvlgWkdrpLvsvSaWr 374
                                   +++ ++g    ++ ee+ +++ l W+d+ L+++SaW+
  Cse_sc054260.1_g020.1 416 nshycpiQFGgENGgftaFEREEDGNAISLAWQDKCLITASAWQ 459
                            33333222333333544455556677777**************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    
MEGVEADEQL LSLGLAIVID SSRERKMKRK RRESFKPLDT TRVSEGKMFS LFETREMMLR  60
KENKXREANT LGEDGKGLHL IHLLLVSATS LDENKLDSAV ENLSELYQNV SLSGDSVQRV  120
AAYFADGLVA GLLTRRSPFH DMIMKEPSPE DEFLAYMELY KVSPYYQFAH FTANQVIMEA  180
FEREEKDNNR ALHVVDLDVG YGFQWPSLMQ SLSDKASTGN RVSLRITGFG ETLEGLEETE  240
ARLVGFAKTF KNLIFEFKGM LRSNCGLKSI RKRKKETLVV NLVFYLNSLC NISYISETLK  300
WINILNPSAV VLVEQEGGRS PRTFLSRFME FLHYYAAMFD SLDDFLPLDS PQRLQIEKNH  360
LGKEIKRLMD FDNDEANSPK YERMETWKAR MESHGFEGMS LSSKSIIQAK LLLKINSHYC  420
PIQFGGENGG FTAFEREEDG NAISLAWQDK CLITASAWQC TLR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12533RKMKRKRRE
2271275RKRKK
3271276RKRKKE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04890.17e-46GRAS family protein