PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc054260.1_g010.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family GRAS
Protein Properties Length: 320aa    MW: 36741.8 Da    PI: 5.1457
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc054260.1_g010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2483.8e-76731675374
                   GRAS  75 seelaalklfsevsPilkfshltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgsk 155
                            ++e+ a+  +++vsP+++f+h+taNq I+ea+e+e     +++H++D+d+++G+QWp+L+q+L++++  ++  slRiTg+g+      
  Cse_sc054260.1_g010.1   7 EDEFLAYMELYKVSPYYQFAHFTANQIIMEAFEREekdnnRALHVVDLDVGYGFQWPSLMQSLSDKAstGNRVSLRITGFGE----TL 90 
                            567788889************************9977777789*********************999766677*********....99 PP

                   GRAS 156 eeleetgerLakfAeel.gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvv 242
                            e leet+ rL  fA+++ ++ fef+ ++    ++  l+++r +++E l+Vnlv+ l +l        s+++e+L+ ++ l+P  vv+v
  Cse_sc054260.1_g010.1  91 EGLEETEARLVGFAKTFkNLIFEFKGMLR---SNCGLQSIRKRKKEILVVNLVFYLNSLC-----NISYISETLNWINILNPSAVVLV 170
                            ****************9569******633...455689****************999998.....44456699*************** PP

                   GRAS 243 eqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvpl 329
                            eqe  ++  +Fl rf+e l+yy+a+fdsl+  lp +s +r  +E+  lg+ei+ +    ++e    + e++e+W++r+e+ GF+ ++l
  Cse_sc054260.1_g010.1 171 EQEGGRSPRTFLSRFMEFLHYYAAMFDSLDDFLPLDSPQRLQIEKNHLGKEIKRLMDFDNDEaNSPKYERMETWKARMESHGFEGMSL 258
                            *********************************************************99998677899******************** PP

                   GRAS 330 sekaakqaklllr........kvk.sdg....yrveeesgslvlgWkdrpLvsvSaWr 374
                            s+k   qaklll+        +++ ++g    ++ ee+ +++ l W+d+ L+++SaW+
  Cse_sc054260.1_g010.1 259 SSKSIIQAKLLLKinshycpiQFGgENGgftaFEREEDGNAISLAWQDKCLITASAWQ 316
                            ************8333333222333333544455556677777**************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    
MKEPSPEDEF LAYMELYKVS PYYQFAHFTA NQIIMEAFER EEKDNNRALH VVDLDVGYGF  60
QWPSLMQSLS DKASTGNRVS LRITGFGETL EGLEETEARL VGFAKTFKNL IFEFKGMLRS  120
NCGLQSIRKR KKEILVVNLV FYLNSLCNIS YISETLNWIN ILNPSAVVLV EQEGGRSPRT  180
FLSRFMEFLH YYAAMFDSLD DFLPLDSPQR LQIEKNHLGK EIKRLMDFDN DEANSPKYER  240
METWKARMES HGFEGMSLSS KSIIQAKLLL KINSHYCPIQ FGGENGGFTA FEREEDGNAI  300
SLAWQDKCLI TASAWQCATS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128132RKRKK
2128133RKRKKE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17490.17e-40GRAS family protein