PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc054168.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

Nin-like

Protein Properties

Length: 685aa MW: 77517.3 Da PI: 5.4094

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc054168.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	51.7	1.7e-16	502	546	2	46
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPh 46 e++i++++++ +F +p+ +AA +L v+ ++LKriCR++GI+RWP+ Cse_sc054168.1_g010.1 502 ESSIRFDEVKPHFGKPMDEAAANLHVSRSTLKRICRNLGIARWPY 546 679*****************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 685 aa Download sequence
MEKHVSFNLP VENSSKSGSS NSDVLASMKS RYPCIYQPMN PSNATLKEEE EDVDDAEDRR 60 YLTSLWVFGT RDIDEPESPL PPSFSNMMVE QNILDQHMIK EKITSALKGL KFREKGVLVQ 120 FWSPVAVKKR WLLTTWDQPF GVSVADEGLY SYRLKSELRA IVVDGEDNKV LGPVGRVYSQ 180 KSPEWSTECK IYGYIDLPVF EPSGNSCVGV LEIITSSNYV DYAFEVHEVS KALKVAALFL 240 YISDERRLHE MDGIFKALKT VCDNHDLPLA QTWALSEYGG FVAKSGHLEQ TCSSFKKSCI 300 GRECMSTDDL PFYVRDLSMW EFHKACRETH LGKSQGVVGR SFSSCGSWFC RDVTELEEDD 360 YPLVPIARMS GLTSCLAIYL TSSELEIEYV IEFFLPARSA DEADLQRLMK TVKEQIENNS 420 CMQLDTMLAP QVIGGAPFKW NLEPSPLPII LSSEKKEDME NEPSNSVAAG KSQSVIHSLE 480 KGVGELDINP GKKRRKRKRS TESSIRFDEV KPHFGKPMDE AAANLHVSRS TLKRICRNLG 540 IARWPYKIPD KTDSLIKLDQ ADKTHDLVSL TENGKDSPLR KKLSSETIIA NKVEYVTIKA 600 TYENNYIKFP FSLLDGLEKL KELIAERFQL KHGSLRLKYL DEDEDLISIT SDEDLKVYLT 660 TFQTQQLKAV IHVFVELVAQ QTSNA

Sequence ? help Back to Top

Protein Sequence Length: 685 aa Download sequence

MEKHVSFNLP VENSSKSGSS NSDVLASMKS RYPCIYQPMN PSNATLKEEE EDVDDAEDRR  60
YLTSLWVFGT RDIDEPESPL PPSFSNMMVE QNILDQHMIK EKITSALKGL KFREKGVLVQ  120
FWSPVAVKKR WLLTTWDQPF GVSVADEGLY SYRLKSELRA IVVDGEDNKV LGPVGRVYSQ  180
KSPEWSTECK IYGYIDLPVF EPSGNSCVGV LEIITSSNYV DYAFEVHEVS KALKVAALFL  240
YISDERRLHE MDGIFKALKT VCDNHDLPLA QTWALSEYGG FVAKSGHLEQ TCSSFKKSCI  300
GRECMSTDDL PFYVRDLSMW EFHKACRETH LGKSQGVVGR SFSSCGSWFC RDVTELEEDD  360
YPLVPIARMS GLTSCLAIYL TSSELEIEYV IEFFLPARSA DEADLQRLMK TVKEQIENNS  420
CMQLDTMLAP QVIGGAPFKW NLEPSPLPII LSSEKKEDME NEPSNSVAAG KSQSVIHSLE  480
KGVGELDINP GKKRRKRKRS TESSIRFDEV KPHFGKPMDE AAANLHVSRS TLKRICRNLG  540
IARWPYKIPD KTDSLIKLDQ ADKTHDLVSL TENGKDSPLR KKLSSETIIA NKVEYVTIKA  600
TYENNYIKFP FSLLDGLEKL KELIAERFQL KHGSLRLKYL DEDEDLISIT SDEDLKVYLT  660
TFQTQQLKAV IHVFVELVAQ QTSNA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	492	496	KKRRK
2	492	498	KKRRKRK
3	493	499	KKRRKRK
4	494	499	RRKRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	2e-81	Nin-like family protein